BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00036184
         (270 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containi...   107   1e-21
ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containi...   107   1e-21
ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containi...   107   1e-21
ref|XP_003617444.1| Pentatricopeptide repeat-containing protein ...   107   1e-21
ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containi...   105   3e-21

>ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score =  107 bits (267), Expect = 1e-21
 Identities = 48/89 (53%), Positives = 65/89 (73%)
 Frame = -2

Query: 269 QVSGVEPDHFAIVSLLTACSRLGVLSLGKWVHAYVERMGLELTVYIGTALIDMYCKCGSV 90
           Q+ GV PD  A+VS ++AC+ L  L LGKW+HAY+ R  L++ V + T LIDMY KCG V
Sbjct: 395 QLHGVRPDETALVSAISACTHLATLDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCV 454

Query: 89  DDALEVFSLMEKKSVRCWNAMLHGLSVNG 3
           ++ALEVF  ME+K V  WNA++ GL++NG
Sbjct: 455 ENALEVFYAMEEKGVSTWNAVILGLAMNG 483



 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
 Frame = -2

Query: 263 SGVEPDHFAIVSLLTACSRLGVLSLGKWVHAYVERMGLELTVYIGTALIDMYCKCGSVDD 84
           SGV  D   +VS L+ACSR+  + +G+WVH    ++G+E  V +  ALI +Y  CG + D
Sbjct: 264 SGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAVKVGVEDYVSLKNALIHLYSSCGEIVD 323

Query: 83  ALEVF-SLMEKKSVRCWNAMLHG 18
           A  +F    E   +  WN+M+ G
Sbjct: 324 ARRIFDDGGELLDLISWNSMISG 346


>ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  107 bits (266), Expect = 1e-21
 Identities = 48/89 (53%), Positives = 66/89 (74%)
 Frame = -2

Query: 269 QVSGVEPDHFAIVSLLTACSRLGVLSLGKWVHAYVERMGLELTVYIGTALIDMYCKCGSV 90
           Q+SG +PD   +VS+++AC+RL  L  GKWVHAY++R GL + V +GT LIDMY KCG V
Sbjct: 500 QMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCV 559

Query: 89  DDALEVFSLMEKKSVRCWNAMLHGLSVNG 3
           + ALEVF  M +K +  WNA++ GL++NG
Sbjct: 560 ETALEVFYGMIEKGISTWNALILGLAMNG 588



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 29/81 (35%), Positives = 46/81 (56%)
 Frame = -2

Query: 260 GVEPDHFAIVSLLTACSRLGVLSLGKWVHAYVERMGLELTVYIGTALIDMYCKCGSVDDA 81
           GV  D    VS L+AC+ L V+++GK +H+   ++G E  + +  ALI MY KCG +  A
Sbjct: 371 GVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVA 430

Query: 80  LEVFSLMEKKSVRCWNAMLHG 18
            ++F       +  WN+M+ G
Sbjct: 431 RKLFDEAYLLDLISWNSMISG 451


>ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  107 bits (266), Expect = 1e-21
 Identities = 48/89 (53%), Positives = 66/89 (74%)
 Frame = -2

Query: 269 QVSGVEPDHFAIVSLLTACSRLGVLSLGKWVHAYVERMGLELTVYIGTALIDMYCKCGSV 90
           Q+SG +PD   +VS+++AC+RL  L  GKWVHAY++R GL + V +GT LIDMY KCG V
Sbjct: 365 QMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCV 424

Query: 89  DDALEVFSLMEKKSVRCWNAMLHGLSVNG 3
           + ALEVF  M +K +  WNA++ GL++NG
Sbjct: 425 ETALEVFYGMIEKGISTWNALILGLAMNG 453



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 29/81 (35%), Positives = 46/81 (56%)
 Frame = -2

Query: 260 GVEPDHFAIVSLLTACSRLGVLSLGKWVHAYVERMGLELTVYIGTALIDMYCKCGSVDDA 81
           GV  D    VS L+AC+ L V+++GK +H+   ++G E  + +  ALI MY KCG +  A
Sbjct: 236 GVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVA 295

Query: 80  LEVFSLMEKKSVRCWNAMLHG 18
            ++F       +  WN+M+ G
Sbjct: 296 RKLFDEAYLLDLISWNSMISG 316


>ref|XP_003617444.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355518779|gb|AET00403.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 542

 Score =  107 bits (266), Expect = 1e-21
 Identities = 47/89 (52%), Positives = 64/89 (71%)
 Frame = -2

Query: 269 QVSGVEPDHFAIVSLLTACSRLGVLSLGKWVHAYVERMGLELTVYIGTALIDMYCKCGSV 90
           QV G E   F +VSLL AC+ LG L  GKWVH Y++R   EL V + TA+IDMYCKCGSV
Sbjct: 255 QVEGFEVSEFTMVSLLNACAHLGALQHGKWVHDYIKRNHFELNVIVVTAIIDMYCKCGSV 314

Query: 89  DDALEVFSLMEKKSVRCWNAMLHGLSVNG 3
           ++A+EVF    ++ + CWN+++ GL++NG
Sbjct: 315 ENAVEVFETCPRRGLSCWNSIIIGLAMNG 343


>ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  105 bits (263), Expect = 3e-21
 Identities = 46/89 (51%), Positives = 66/89 (74%)
 Frame = -2

Query: 269 QVSGVEPDHFAIVSLLTACSRLGVLSLGKWVHAYVERMGLELTVYIGTALIDMYCKCGSV 90
           Q+  + PD   +VS+++AC+ L  L  GKWVHAY+ + GL++ V +GT L+DMY KCG V
Sbjct: 428 QLGQIRPDETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCV 487

Query: 89  DDALEVFSLMEKKSVRCWNAMLHGLSVNG 3
           ++ALEVF+ ME+K V  WNA++ GL+VNG
Sbjct: 488 ENALEVFNGMEEKGVSSWNALIIGLAVNG 516



 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 30/82 (36%), Positives = 47/82 (57%)
 Frame = -2

Query: 263 SGVEPDHFAIVSLLTACSRLGVLSLGKWVHAYVERMGLELTVYIGTALIDMYCKCGSVDD 84
           +G+  D   +VS+L+AC+ L ++  GK +H  V RMG+E  V +  ALI MY   G + D
Sbjct: 298 NGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMD 357

Query: 83  ALEVFSLMEKKSVRCWNAMLHG 18
           A ++F+         WN+M+ G
Sbjct: 358 AQKLFNGSHNLDQISWNSMISG 379