BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00036176
         (287 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283446.2| PREDICTED: putative pentatricopeptide repeat...   150   8e-35
emb|CBI21173.3| unnamed protein product [Vitis vinifera]              150   8e-35
ref|XP_003551183.1| PREDICTED: putative pentatricopeptide repeat...   149   2e-34
ref|XP_002533336.1| pentatricopeptide repeat-containing protein,...   149   3e-34
ref|XP_002310370.1| predicted protein [Populus trichocarpa] gi|2...   147   9e-34

>ref|XP_002283446.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Vitis vinifera]
          Length = 829

 Score =  150 bits (380), Expect = 8e-35
 Identities = 72/95 (75%), Positives = 82/95 (86%)
 Frame = -3

Query: 285 GFETNDFVASSLIFMYSKCGIIEDARKSFEETPKDNAITWNSILFGYAQHGLGKKALELF 106
           GFE N FVASSLIFMYSKCG+IEDARKSF+ TPKD++I WNS++FGYAQHG GK AL+LF
Sbjct: 436 GFEPNGFVASSLIFMYSKCGVIEDARKSFDATPKDSSIAWNSLIFGYAQHGRGKIALDLF 495

Query: 105 SRMQETEVKPDHITFVAVLTACSHIGLVEQGSQFL 1
             M++  VK DHITFVAVLTACSHIGLVE+G  FL
Sbjct: 496 FLMKDRRVKLDHITFVAVLTACSHIGLVEEGWSFL 530



 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
 Frame = -3

Query: 264 VASSLIFMYSKCGI--IEDARKSFEETPKDNAITWNSILFGYAQHGLGKKALELFSRMQE 91
           +++SLI MY K     +++A   FE     + ++WNSIL G++Q GL + AL+ F  M+ 
Sbjct: 340 ISNSLIAMYLKSHSKSMDEALNIFESLENKDHVSWNSILTGFSQSGLSEDALKFFENMRS 399

Query: 90  TEVKPDHITFVAVLTACSHIGLVEQGSQ 7
             V  DH  F AVL +CS +  ++ G Q
Sbjct: 400 QYVVIDHYAFSAVLRSCSDLATLQLGQQ 427



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 32/80 (40%), Positives = 47/80 (58%)
 Frame = -3

Query: 285 GFETNDFVASSLIFMYSKCGIIEDARKSFEETPKDNAITWNSILFGYAQHGLGKKALELF 106
           G+E N F  S+L+ MY+KC  +EDA + F+     N++TWN+++ GYAQ G    A  L 
Sbjct: 130 GYEGNVFAGSALLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLL 189

Query: 105 SRMQETEVKPDHITFVAVLT 46
             M+   V+ D  TF  +LT
Sbjct: 190 DCMELEGVEIDDGTFAPLLT 209



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 30/93 (32%), Positives = 51/93 (54%)
 Frame = -3

Query: 285 GFETNDFVASSLIFMYSKCGIIEDARKSFEETPKDNAITWNSILFGYAQHGLGKKALELF 106
           G   + + A+++I  Y+KCG I  A K F ET + +A++WN+++ G+   G  + ALE  
Sbjct: 29  GTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNFETALEFL 88

Query: 105 SRMQETEVKPDHITFVAVLTACSHIGLVEQGSQ 7
             M+      D  +F ++L   + +G VE G Q
Sbjct: 89  KSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQ 121



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 34/107 (31%), Positives = 60/107 (56%), Gaps = 12/107 (11%)
 Frame = -3

Query: 285 GFETNDFVASSLIFMYSKCGIIEDARKSFEETPKD-NAITWNSILFGYAQHGLGKKALEL 109
           G  ++  V +++I  YS+CG IEDA + F+   +  + +TWNS+L  Y  +   ++A +L
Sbjct: 231 GLASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLVTWNSMLAAYLVNNQEEEAFQL 290

Query: 108 FSRMQETEVKPDHITFVAVLTAC---SHIG--------LVEQGSQFL 1
           F  MQ    +PD  T+ +V++A    SH G        ++++G +FL
Sbjct: 291 FLEMQVLGFEPDIYTYTSVISAAFEGSHQGQGKSLHGLVIKRGLEFL 337


>emb|CBI21173.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  150 bits (380), Expect = 8e-35
 Identities = 72/95 (75%), Positives = 82/95 (86%)
 Frame = -3

Query: 285 GFETNDFVASSLIFMYSKCGIIEDARKSFEETPKDNAITWNSILFGYAQHGLGKKALELF 106
           GFE N FVASSLIFMYSKCG+IEDARKSF+ TPKD++I WNS++FGYAQHG GK AL+LF
Sbjct: 335 GFEPNGFVASSLIFMYSKCGVIEDARKSFDATPKDSSIAWNSLIFGYAQHGRGKIALDLF 394

Query: 105 SRMQETEVKPDHITFVAVLTACSHIGLVEQGSQFL 1
             M++  VK DHITFVAVLTACSHIGLVE+G  FL
Sbjct: 395 FLMKDRRVKLDHITFVAVLTACSHIGLVEEGWSFL 429



 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 38/96 (39%), Positives = 58/96 (60%), Gaps = 3/96 (3%)
 Frame = -3

Query: 285 GFETNDFVASSLIFMYSKCGIIEDARKSFE---ETPKDNAITWNSILFGYAQHGLGKKAL 115
           G  ++  V +++I  YS+CG IEDA + F+   ET   + ++WNSIL G++Q GL + AL
Sbjct: 231 GLASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLDHVSWNSILTGFSQSGLSEDAL 290

Query: 114 ELFSRMQETEVKPDHITFVAVLTACSHIGLVEQGSQ 7
           + F  M+   V  DH  F AVL +CS +  ++ G Q
Sbjct: 291 KFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQ 326



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 32/80 (40%), Positives = 47/80 (58%)
 Frame = -3

Query: 285 GFETNDFVASSLIFMYSKCGIIEDARKSFEETPKDNAITWNSILFGYAQHGLGKKALELF 106
           G+E N F  S+L+ MY+KC  +EDA + F+     N++TWN+++ GYAQ G    A  L 
Sbjct: 130 GYEGNVFAGSALLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLL 189

Query: 105 SRMQETEVKPDHITFVAVLT 46
             M+   V+ D  TF  +LT
Sbjct: 190 DCMELEGVEIDDGTFAPLLT 209



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 30/93 (32%), Positives = 51/93 (54%)
 Frame = -3

Query: 285 GFETNDFVASSLIFMYSKCGIIEDARKSFEETPKDNAITWNSILFGYAQHGLGKKALELF 106
           G   + + A+++I  Y+KCG I  A K F ET + +A++WN+++ G+   G  + ALE  
Sbjct: 29  GTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNFETALEFL 88

Query: 105 SRMQETEVKPDHITFVAVLTACSHIGLVEQGSQ 7
             M+      D  +F ++L   + +G VE G Q
Sbjct: 89  KSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQ 121


>ref|XP_003551183.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Glycine max]
          Length = 703

 Score =  149 bits (376), Expect = 2e-34
 Identities = 72/95 (75%), Positives = 80/95 (84%)
 Frame = -3

Query: 285 GFETNDFVASSLIFMYSKCGIIEDARKSFEETPKDNAITWNSILFGYAQHGLGKKALELF 106
           GF+TN +V SSLIFMYSKCGIIEDARKSFE T KDNAI WNSI+FGYAQHG G  AL+LF
Sbjct: 430 GFDTNSYVGSSLIFMYSKCGIIEDARKSFEATSKDNAIVWNSIIFGYAQHGQGNIALDLF 489

Query: 105 SRMQETEVKPDHITFVAVLTACSHIGLVEQGSQFL 1
             M+E +VK DHITFVAVLTACSH GLVE+G  F+
Sbjct: 490 YMMKERKVKLDHITFVAVLTACSHNGLVEEGCNFI 524



 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 37/96 (38%), Positives = 56/96 (58%), Gaps = 2/96 (2%)
 Frame = -3

Query: 285 GFETNDFVASSLIFMYSKCG--IIEDARKSFEETPKDNAITWNSILFGYAQHGLGKKALE 112
           G + +  V+++LI MY +     +EDA + F      +  TWNSIL GY Q GL + AL 
Sbjct: 327 GLDNSVPVSNALISMYIRFNDRCMEDALRIFFSMDLKDCCTWNSILAGYVQVGLSEDALR 386

Query: 111 LFSRMQETEVKPDHITFVAVLTACSHIGLVEQGSQF 4
           LF +M+   ++ DH TF AV+ +CS +  ++ G QF
Sbjct: 387 LFLQMRCLVIEIDHYTFSAVIRSCSDLATLQLGQQF 422


>ref|XP_002533336.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223526827|gb|EEF29045.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 708

 Score =  149 bits (375), Expect = 3e-34
 Identities = 72/95 (75%), Positives = 82/95 (86%)
 Frame = -3

Query: 285 GFETNDFVASSLIFMYSKCGIIEDARKSFEETPKDNAITWNSILFGYAQHGLGKKALELF 106
           GFE+NDFVASSLIFMYSKCG+IEDARKSFE+T KD++ITWNSI+F YAQHG G  AL LF
Sbjct: 435 GFESNDFVASSLIFMYSKCGMIEDARKSFEKTAKDSSITWNSIMFAYAQHGQGDVALGLF 494

Query: 105 SRMQETEVKPDHITFVAVLTACSHIGLVEQGSQFL 1
            +M++ +VK DHITFVA LTACSHIGLVEQG   L
Sbjct: 495 FQMRDKKVKMDHITFVAALTACSHIGLVEQGRYLL 529



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 29/85 (34%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
 Frame = -3

Query: 285 GFETNDFVASSLIFMYSKCGIIEDARKSFE-ETPKDNAITWNSILFGYAQHGLGKKALEL 109
           G + ++ V ++ I  YS+CG +EDA + F+      + +TWNS+L  +  H   + A +L
Sbjct: 233 GVQFDNTVCNATITSYSQCGSLEDAERVFDGAVGSRDLVTWNSMLAAFLAHDRKETAFKL 292

Query: 108 FSRMQETEVKPDHITFVAVLTACSH 34
           F  MQ+   +PD  T+  +++ACSH
Sbjct: 293 FLDMQQFGFEPDIYTYTTIISACSH 317



 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
 Frame = -3

Query: 264 VASSLIFMY--SKCGIIEDARKSFEETPKDNAITWNSILFGYAQHGLGKKALELFSRMQE 91
           + +++I MY  S    +EDA   F      + ++WNSIL G++Q G  + AL+LF  M+ 
Sbjct: 339 ICNAVIAMYLESSSNSMEDALNVFHSMESKDRVSWNSILTGFSQTGHSENALKLFVHMRF 398

Query: 90  TEVKPDHITFVAVLTACSHIGLVEQGSQ 7
             V  DH  F AVL +CS +  ++ G Q
Sbjct: 399 AVVDIDHYAFSAVLRSCSDLATLQLGQQ 426



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 11/105 (10%)
 Frame = -3

Query: 285 GFETNDFVASSLIFMYSKCGIIEDARKSFEETPKDNAITWNSILFGYAQHGLGKKALELF 106
           G+E + +  S+L+ MY+KC  + DA   F+  P+ N+++WN+++ G+   G    A  L 
Sbjct: 132 GYEEHVYAGSALLDMYAKCERVRDAFMVFKCIPRRNSVSWNALIAGFVLEGDHDTAFWLL 191

Query: 105 SRMQETEVKPDHITFVAVLTACS-----------HIGLVEQGSQF 4
             M+E  V+ D  TF  +LT              H  +++ G QF
Sbjct: 192 RCMEEEGVRLDDGTFSPLLTLLDEKKFYKLTMQLHCKIIKHGVQF 236


>ref|XP_002310370.1| predicted protein [Populus trichocarpa] gi|222853273|gb|EEE90820.1|
           predicted protein [Populus trichocarpa]
          Length = 711

 Score =  147 bits (371), Expect = 9e-34
 Identities = 70/91 (76%), Positives = 81/91 (89%)
 Frame = -3

Query: 285 GFETNDFVASSLIFMYSKCGIIEDARKSFEETPKDNAITWNSILFGYAQHGLGKKALELF 106
           GF++NDFVASSLIFMYSKCGIIEDA K FE+T K+++ITWNSI+F YAQHG G  AL+LF
Sbjct: 438 GFDSNDFVASSLIFMYSKCGIIEDAWKCFEDTTKESSITWNSIMFAYAQHGQGDVALDLF 497

Query: 105 SRMQETEVKPDHITFVAVLTACSHIGLVEQG 13
           S M+E EVK DH+TFVAVLTACSH+GLVEQG
Sbjct: 498 SIMREREVKLDHVTFVAVLTACSHVGLVEQG 528



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
 Frame = -3

Query: 285 GFETNDFVASSLIFMYSKCGIIEDARKSFE-ETPKDNAITWNSILFGYAQHGLGKKALEL 109
           G E  + + ++ +  YS+CG++EDA++ F+      + +TWNS+L  Y  H   + A  L
Sbjct: 233 GLEFYNALCNATLTAYSECGLLEDAKRVFDGAVGTRDLVTWNSMLVAYLVHDKDEDAFNL 292

Query: 108 FSRMQETEVKPDHITFVAVLTACSHIGLVEQGSQF 4
           F  MQ    +PD  T+  V++AC        G  F
Sbjct: 293 FLEMQGFGFEPDIYTYTCVISACFAAAHKNYGKSF 327



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
 Frame = -3

Query: 285 GFETNDFVASSLIFMYSKCG--IIEDARKSFEETPKDNAITWNSILFGYAQHGLGKKALE 112
           G E +  + ++LI MY K     +E A   F      + ++WNSIL G++Q G  + AL+
Sbjct: 335 GLEESVTICNALITMYLKLNNKSMEAALNLFHSMKSKDRVSWNSILTGFSQMGFSEDALK 394

Query: 111 LFSRMQETEVKPDHITFVAVLTACSHIGLVEQGSQ 7
           LF  M+ +  + D   + AVL +CS + +++ G Q
Sbjct: 395 LFGHMRSSLEEIDDYAYSAVLRSCSDLAILQLGQQ 429



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
 Frame = -3

Query: 285 GFETNDFVASSLIFMYSKC--GIIEDARKSFEETPKDNAITWNSILFGYAQHGLGKKALE 112
           G  ++ +VA++++F YSKC  G +  A K F+E P  + +TWN+++ GY + G    A E
Sbjct: 29  GIISHIYVANNILFRYSKCFSGDLNLACKLFDEMPHKDTVTWNTMITGYVESGNLGAAWE 88

Query: 111 LFSRMQETEVKPDHITFVAVLTACSHIGLVEQGSQ 7
               M+    + D  TF ++L   +H    + G Q
Sbjct: 89  FLKSMKRRGFQADGYTFGSILKGVAHACRHDLGQQ 123



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 28/80 (35%), Positives = 46/80 (57%)
 Frame = -3

Query: 285 GFETNDFVASSLIFMYSKCGIIEDARKSFEETPKDNAITWNSILFGYAQHGLGKKALELF 106
           G+E + +  S+L+ MY+KC  +EDA   F+  P  N ++WN+++ G+ Q G    A  L 
Sbjct: 132 GYEQSVYAGSALLDMYAKCERVEDAYDVFQGMPVRNFVSWNALIDGFVQVGDRDTAFWLL 191

Query: 105 SRMQETEVKPDHITFVAVLT 46
             MQ+  V+ +  TF  +LT
Sbjct: 192 DCMQKEGVRVEDGTFAPLLT 211