BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00036174
         (666 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004149831.1| PREDICTED: pentatricopeptide repeat-containi...   268   9e-70
ref|XP_002279168.1| PREDICTED: pentatricopeptide repeat-containi...   248   8e-64
emb|CBI15606.3| unnamed protein product [Vitis vinifera]              248   8e-64
gb|AAG29200.1|AC078898_10 hypothetical protein [Arabidopsis thal...   247   1e-63
ref|NP_177865.2| pentatricopeptide repeat-containing protein [Ar...   247   1e-63

>ref|XP_004149831.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g77405-like [Cucumis sativus]
           gi|449518241|ref|XP_004166151.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At1g77405-like [Cucumis sativus]
          Length = 445

 Score =  268 bits (684), Expect = 9e-70
 Identities = 132/209 (63%), Positives = 158/209 (75%), Gaps = 8/209 (3%)
 Frame = +1

Query: 64  SSSPLTKQILTAVIQNRSFDTQLSISP--------WTVHTVSQVLRSIPTLFFQSTRSIG 219
           S+  L  QIL A+++NR FDT +  +         W+  +VS VLRS+P  FFQS RSIG
Sbjct: 10  SNHRLVDQILVAMLKNRPFDTHVHSAASTSTTHQLWSSDSVSDVLRSVPRFFFQSARSIG 69

Query: 220 RQECFRHRAPLKQRDIRKERYDTRKGVRVFGPASFRDPNKVKLGLDKALEFYYWVETHFG 399
            Q+ FRHR PLKQR +++E Y  R  V V GP + RDP K KLGL+KALEF+YWVETHFG
Sbjct: 70  TQKGFRHRTPLKQRKLKEEAYKFRNNVLVLGPGAHRDPFKAKLGLNKALEFFYWVETHFG 129

Query: 400 YIHDDITCKEMALVLAKGNRLNRLWEFLLEMARRRDGKLVSTSTITCLIKVLGEEGLVNE 579
           + HD+ITC+EMA VLA+GN L  LW+FL EM+RR +G LV+T+TITCLIKVLGEEGLVNE
Sbjct: 130 FQHDEITCREMACVLARGNTLMGLWDFLKEMSRRENGGLVTTATITCLIKVLGEEGLVNE 189

Query: 580 ALALFYRMKQFHCKPDVYAYNTIICALCR 666
           AL  FYRMKQFHCKPDVYAYNT+I  LCR
Sbjct: 190 ALTAFYRMKQFHCKPDVYAYNTVINVLCR 218


>ref|XP_002279168.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g77405-like [Vitis vinifera]
          Length = 432

 Score =  248 bits (633), Expect = 8e-64
 Identities = 125/202 (61%), Positives = 154/202 (76%), Gaps = 3/202 (1%)
 Frame = +1

Query: 70  SPLTKQILTAVIQNRSFDTQLSIS---PWTVHTVSQVLRSIPTLFFQSTRSIGRQECFRH 240
           S L KQ+L A++QN   D   + S   PWT  +VS+VLRSIP LFFQS RSIGRQ+ FRH
Sbjct: 12  SSLVKQVLAAMVQNCPLDASPNKSCNQPWTTDSVSEVLRSIPRLFFQSPRSIGRQKGFRH 71

Query: 241 RAPLKQRDIRKERYDTRKGVRVFGPASFRDPNKVKLGLDKALEFYYWVETHFGYIHDDIT 420
           R+PLKQR++ +E     +         +RDP+KVKLG++KA+EFY WVET FG+ H+++T
Sbjct: 72  RSPLKQRNLYQEPNKFHR---------YRDPHKVKLGVEKAMEFYSWVETQFGFSHNEMT 122

Query: 421 CKEMALVLAKGNRLNRLWEFLLEMARRRDGKLVSTSTITCLIKVLGEEGLVNEALALFYR 600
           C+EM  VLA+GNRL  LWEFL EMAR+    +V+T+TITCL+KVLGEEGL N+ALA FYR
Sbjct: 123 CREMGCVLARGNRLKVLWEFLHEMARKGGNGVVTTATITCLMKVLGEEGLANQALAAFYR 182

Query: 601 MKQFHCKPDVYAYNTIICALCR 666
           MKQFHCKPDVYAYNTII ALCR
Sbjct: 183 MKQFHCKPDVYAYNTIIYALCR 204


>emb|CBI15606.3| unnamed protein product [Vitis vinifera]
          Length = 381

 Score =  248 bits (633), Expect = 8e-64
 Identities = 125/202 (61%), Positives = 154/202 (76%), Gaps = 3/202 (1%)
 Frame = +1

Query: 70  SPLTKQILTAVIQNRSFDTQLSIS---PWTVHTVSQVLRSIPTLFFQSTRSIGRQECFRH 240
           S L KQ+L A++QN   D   + S   PWT  +VS+VLRSIP LFFQS RSIGRQ+ FRH
Sbjct: 12  SSLVKQVLAAMVQNCPLDASPNKSCNQPWTTDSVSEVLRSIPRLFFQSPRSIGRQKGFRH 71

Query: 241 RAPLKQRDIRKERYDTRKGVRVFGPASFRDPNKVKLGLDKALEFYYWVETHFGYIHDDIT 420
           R+PLKQR++ +E     +         +RDP+KVKLG++KA+EFY WVET FG+ H+++T
Sbjct: 72  RSPLKQRNLYQEPNKFHR---------YRDPHKVKLGVEKAMEFYSWVETQFGFSHNEMT 122

Query: 421 CKEMALVLAKGNRLNRLWEFLLEMARRRDGKLVSTSTITCLIKVLGEEGLVNEALALFYR 600
           C+EM  VLA+GNRL  LWEFL EMAR+    +V+T+TITCL+KVLGEEGL N+ALA FYR
Sbjct: 123 CREMGCVLARGNRLKVLWEFLHEMARKGGNGVVTTATITCLMKVLGEEGLANQALAAFYR 182

Query: 601 MKQFHCKPDVYAYNTIICALCR 666
           MKQFHCKPDVYAYNTII ALCR
Sbjct: 183 MKQFHCKPDVYAYNTIIYALCR 204


>gb|AAG29200.1|AC078898_10 hypothetical protein [Arabidopsis thaliana]
          Length = 410

 Score =  247 bits (631), Expect = 1e-63
 Identities = 120/202 (59%), Positives = 153/202 (75%), Gaps = 5/202 (2%)
 Frame = +1

Query: 76  LTKQILTAVIQNRSFDTQLSIS----PWTVHTVSQVLRSIPTLFFQSTRSIGRQECFRHR 243
           +  Q++TA+IQNR FD  L+ S    PWT   VS VL SIP  FF S RSIGRQ+ FRHR
Sbjct: 11  IVDQLITAMIQNRPFDAVLASSTVAKPWTQQLVSDVLHSIPRFFFISPRSIGRQKGFRHR 70

Query: 244 APLKQRDIRKERYDTRKGVRVFGPASFRDPNKVKLGLDKALEFYYWVETHFGYIHDDITC 423
           +PLKQR++  E    R  V V GP ++ DP KV +GL KALEF++W+ETHFG+ H++ITC
Sbjct: 71  SPLKQRNLSDESQRRRSEVLVLGPGAYMDPKKVSIGLQKALEFFFWIETHFGFDHNEITC 130

Query: 424 KEMALVLAKGNRLNRLWEFLLEMARRRDGK-LVSTSTITCLIKVLGEEGLVNEALALFYR 600
           ++MA +LAKGN    LW+FL +++RR +GK +V+T++ITCL+K LGEEG V EALA FYR
Sbjct: 131 RDMACLLAKGNDFKGLWDFLRQVSRRENGKNVVTTASITCLMKCLGEEGFVKEALATFYR 190

Query: 601 MKQFHCKPDVYAYNTIICALCR 666
           MK++HCKPDVYAYNTII ALCR
Sbjct: 191 MKEYHCKPDVYAYNTIINALCR 212


>ref|NP_177865.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|122244095|sp|Q1PFC5.1|PP130_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g77405 gi|91806103|gb|ABE65780.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
           gi|332197853|gb|AEE35974.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 458

 Score =  247 bits (631), Expect = 1e-63
 Identities = 120/202 (59%), Positives = 153/202 (75%), Gaps = 5/202 (2%)
 Frame = +1

Query: 76  LTKQILTAVIQNRSFDTQLSIS----PWTVHTVSQVLRSIPTLFFQSTRSIGRQECFRHR 243
           +  Q++TA+IQNR FD  L+ S    PWT   VS VL SIP  FF S RSIGRQ+ FRHR
Sbjct: 11  IVDQLITAMIQNRPFDAVLASSTVAKPWTQQLVSDVLHSIPRFFFISPRSIGRQKGFRHR 70

Query: 244 APLKQRDIRKERYDTRKGVRVFGPASFRDPNKVKLGLDKALEFYYWVETHFGYIHDDITC 423
           +PLKQR++  E    R  V V GP ++ DP KV +GL KALEF++W+ETHFG+ H++ITC
Sbjct: 71  SPLKQRNLSDESQRRRSEVLVLGPGAYMDPKKVSIGLQKALEFFFWIETHFGFDHNEITC 130

Query: 424 KEMALVLAKGNRLNRLWEFLLEMARRRDGK-LVSTSTITCLIKVLGEEGLVNEALALFYR 600
           ++MA +LAKGN    LW+FL +++RR +GK +V+T++ITCL+K LGEEG V EALA FYR
Sbjct: 131 RDMACLLAKGNDFKGLWDFLRQVSRRENGKNVVTTASITCLMKCLGEEGFVKEALATFYR 190

Query: 601 MKQFHCKPDVYAYNTIICALCR 666
           MK++HCKPDVYAYNTII ALCR
Sbjct: 191 MKEYHCKPDVYAYNTIINALCR 212