BLASTX nr result

ID: Coptis24_contig00036170 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00036170
         (253 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002529079.1| ATP-binding cassette transporter, putative [...   125   4e-27
ref|XP_004164072.1| PREDICTED: ABC transporter G family member 3...   123   2e-26
ref|XP_004143306.1| PREDICTED: ABC transporter G family member 3...   122   2e-26
ref|XP_002311035.1| predicted protein [Populus trichocarpa] gi|2...   121   7e-26
emb|CAN80610.1| hypothetical protein VITISV_042903 [Vitis vinifera]   120   2e-25

>ref|XP_002529079.1| ATP-binding cassette transporter, putative [Ricinus communis]
            gi|223531491|gb|EEF33323.1| ATP-binding cassette
            transporter, putative [Ricinus communis]
          Length = 1446

 Score =  125 bits (314), Expect = 4e-27
 Identities = 64/92 (69%), Positives = 70/92 (76%), Gaps = 9/92 (9%)
 Frame = -2

Query: 249  DTPDLSVSRVNVGEELQG---------RGMVLPFQPLALAFNHVNYYVDMPAEMKIQGIE 97
            D PD    R N G  +           +GMVLPFQPLALAFNHVNYYVDMPAEMK QG+E
Sbjct: 807  DEPDSIARRQNAGGSISSNSGITNQSKKGMVLPFQPLALAFNHVNYYVDMPAEMKSQGVE 866

Query: 96   DSRLQLLQDVSGVFRPGVLTALVGVSGAGKTT 1
            +SRLQLL+DVSG FRPG+LTALVGVSGAGKTT
Sbjct: 867  ESRLQLLRDVSGAFRPGILTALVGVSGAGKTT 898


>ref|XP_004164072.1| PREDICTED: ABC transporter G family member 39-like [Cucumis sativus]
          Length = 1455

 Score =  123 bits (308), Expect = 2e-26
 Identities = 61/81 (75%), Positives = 67/81 (82%)
 Frame = -2

Query: 243  PDLSVSRVNVGEELQGRGMVLPFQPLALAFNHVNYYVDMPAEMKIQGIEDSRLQLLQDVS 64
            P  S +  N     + +GMVLPFQPL+LAFNHVNYYVDMPAEMK QGI+D RLQLL+DVS
Sbjct: 827  PIKSSNAANNSNSTEKKGMVLPFQPLSLAFNHVNYYVDMPAEMKSQGIDDDRLQLLRDVS 886

Query: 63   GVFRPGVLTALVGVSGAGKTT 1
            G FRPGVLTALVGVSGAGKTT
Sbjct: 887  GAFRPGVLTALVGVSGAGKTT 907


>ref|XP_004143306.1| PREDICTED: ABC transporter G family member 39-like [Cucumis sativus]
          Length = 1455

 Score =  122 bits (307), Expect = 2e-26
 Identities = 61/81 (75%), Positives = 67/81 (82%)
 Frame = -2

Query: 243  PDLSVSRVNVGEELQGRGMVLPFQPLALAFNHVNYYVDMPAEMKIQGIEDSRLQLLQDVS 64
            P  S +  N     + +GMVLPFQPL+LAFNHVNYYVDMPAEMK QGI+D RLQLL+DVS
Sbjct: 827  PIKSSNAANNSNSTKKKGMVLPFQPLSLAFNHVNYYVDMPAEMKSQGIDDDRLQLLRDVS 886

Query: 63   GVFRPGVLTALVGVSGAGKTT 1
            G FRPGVLTALVGVSGAGKTT
Sbjct: 887  GAFRPGVLTALVGVSGAGKTT 907


>ref|XP_002311035.1| predicted protein [Populus trichocarpa] gi|222850855|gb|EEE88402.1|
           predicted protein [Populus trichocarpa]
          Length = 1390

 Score =  121 bits (303), Expect = 7e-26
 Identities = 58/65 (89%), Positives = 63/65 (96%)
 Frame = -2

Query: 195 RGMVLPFQPLALAFNHVNYYVDMPAEMKIQGIEDSRLQLLQDVSGVFRPGVLTALVGVSG 16
           RGMVLPFQPL+LAFNHVNYYVDMPAEMK+QGI++ RLQLL+DVSG FRPGVLTALVGVSG
Sbjct: 784 RGMVLPFQPLSLAFNHVNYYVDMPAEMKMQGIKEDRLQLLRDVSGAFRPGVLTALVGVSG 843

Query: 15  AGKTT 1
           AGKTT
Sbjct: 844 AGKTT 848


>emb|CAN80610.1| hypothetical protein VITISV_042903 [Vitis vinifera]
          Length = 1357

 Score =  120 bits (300), Expect = 2e-25
 Identities = 58/78 (74%), Positives = 64/78 (82%)
 Frame = -2

Query: 234 SVSRVNVGEELQGRGMVLPFQPLALAFNHVNYYVDMPAEMKIQGIEDSRLQLLQDVSGVF 55
           S S +        +GMVLPFQPL LAFNHVNYYVDMPAEMK QG+E+ RLQLL+DVSG F
Sbjct: 732 SSSXIGAANNESRKGMVLPFQPLPLAFNHVNYYVDMPAEMKSQGVEEDRLQLLRDVSGAF 791

Query: 54  RPGVLTALVGVSGAGKTT 1
           RPG+LTALVGVSGAGKTT
Sbjct: 792 RPGILTALVGVSGAGKTT 809


Top