BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00036141
         (415 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containi...    84   9e-15
emb|CBI36755.3| unnamed protein product [Vitis vinifera]               83   2e-14
ref|XP_002284834.1| PREDICTED: putative pentatricopeptide repeat...    83   2e-14
ref|NP_178260.1| pentatricopeptide repeat-containing protein [Ar...    82   3e-14
ref|XP_002330193.1| predicted protein [Populus trichocarpa] gi|2...    81   8e-14

>ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
           mitochondrial [Vitis vinifera]
           gi|297737690|emb|CBI26891.3| unnamed protein product
           [Vitis vinifera]
          Length = 610

 Score = 84.3 bits (207), Expect = 9e-15
 Identities = 44/122 (36%), Positives = 73/122 (59%), Gaps = 1/122 (0%)
 Frame = -2

Query: 372 PTKEEWLYTSLKSPKT-PTQLKTLHAQIIKTGLTQNDLVFGQLFLCCSISNTMNYARHLF 196
           P  ++ L T L+S  + P+ LK LHA ++ TGL+  + +  QL    ++   M+YAR LF
Sbjct: 33  PITKQALTTLLQSCSSHPSLLKQLHALLLTTGLSIKNALITQLLTSLTLLGDMSYARQLF 92

Query: 195 DKLHHPKLFFYNAMIKGYSLNDFHQDALTLYTLMRYRSVTCDSFTFPVVLRSASTLGKIH 16
           D++H P+ F +N ++KGY  N     A+++Y  MR+  V  D FTFP V+++ + L ++ 
Sbjct: 93  DEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFPFVIKACAELAELW 152

Query: 15  IG 10
            G
Sbjct: 153 AG 154


>emb|CBI36755.3| unnamed protein product [Vitis vinifera]
          Length = 751

 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 41/114 (35%), Positives = 72/114 (63%), Gaps = 2/114 (1%)
 Frame = -2

Query: 342 LKSPKTPTQLKTLHAQIIKTGLTQNDLVFGQLFLCCSISNT--MNYARHLFDKLHHPKLF 169
           L+  KT  +LK LH  +I T + Q+ +   +L   C+ S++  +NYA+ +F+++  P L+
Sbjct: 12  LEKCKTMAELKRLHGLMITTSVIQDVIPLSRLVDFCAYSDSGNLNYAKSVFNQIDRPSLY 71

Query: 168 FYNAMIKGYSLNDFHQDALTLYTLMRYRSVTCDSFTFPVVLRSASTLGKIHIGK 7
            +N+MIKGYS+++   +ALT+Y  MR +    D FTFP VL++ S +   ++G+
Sbjct: 72  IWNSMIKGYSISESPDEALTMYREMRQKGYAPDHFTFPFVLKACSLVNGYNLGQ 125


>ref|XP_002284834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240 [Vitis vinifera]
          Length = 565

 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 41/114 (35%), Positives = 72/114 (63%), Gaps = 2/114 (1%)
 Frame = -2

Query: 342 LKSPKTPTQLKTLHAQIIKTGLTQNDLVFGQLFLCCSISNT--MNYARHLFDKLHHPKLF 169
           L+  KT  +LK LH  +I T + Q+ +   +L   C+ S++  +NYA+ +F+++  P L+
Sbjct: 12  LEKCKTMAELKRLHGLMITTSVIQDVIPLSRLVDFCAYSDSGNLNYAKSVFNQIDRPSLY 71

Query: 168 FYNAMIKGYSLNDFHQDALTLYTLMRYRSVTCDSFTFPVVLRSASTLGKIHIGK 7
            +N+MIKGYS+++   +ALT+Y  MR +    D FTFP VL++ S +   ++G+
Sbjct: 72  IWNSMIKGYSISESPDEALTMYREMRQKGYAPDHFTFPFVLKACSLVNGYNLGQ 125


>ref|NP_178260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75216969|sp|Q9ZVF4.1|PP140_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g01510, mitochondrial; Flags: Precursor
           gi|3785980|gb|AAC67327.1| hypothetical protein
           [Arabidopsis thaliana] gi|330250369|gb|AEC05463.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 584

 Score = 82.4 bits (202), Expect = 3e-14
 Identities = 40/109 (36%), Positives = 62/109 (56%)
 Frame = -2

Query: 336 SPKTPTQLKTLHAQIIKTGLTQNDLVFGQLFLCCSISNTMNYARHLFDKLHHPKLFFYNA 157
           S   P QLK +HA +++TG ++ + +  QL     +   M YAR +FD++H P++F +N 
Sbjct: 20  SSSKPKQLKKIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPRIFLWNT 79

Query: 156 MIKGYSLNDFHQDALTLYTLMRYRSVTCDSFTFPVVLRSASTLGKIHIG 10
           + KGY  N    ++L LY  MR   V  D FT+P V+++ S LG    G
Sbjct: 80  LFKGYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCG 128


>ref|XP_002330193.1| predicted protein [Populus trichocarpa] gi|222871649|gb|EEF08780.1|
           predicted protein [Populus trichocarpa]
          Length = 485

 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 38/112 (33%), Positives = 64/112 (57%)
 Frame = -2

Query: 342 LKSPKTPTQLKTLHAQIIKTGLTQNDLVFGQLFLCCSISNTMNYARHLFDKLHHPKLFFY 163
           L   +T TQL+ +HA  ++ GL Q + +       C   N M YA  +F +  +P +  +
Sbjct: 16  LHGRETRTQLREIHAHFLRHGLNQLNQILSHFVSICGSLNKMAYANRIFKQTQNPTIILF 75

Query: 162 NAMIKGYSLNDFHQDALTLYTLMRYRSVTCDSFTFPVVLRSASTLGKIHIGK 7
           NAMIKGYSLN   +++  L++ M+ R +  D +T   +L++ S+LG + +GK
Sbjct: 76  NAMIKGYSLNGPFEESFRLFSSMKNRGIWPDEYTLAPLLKACSSLGVLQLGK 127