BLASTX nr result

ID: Coptis24_contig00036129 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00036129
         (304 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002323541.1| predicted protein [Populus trichocarpa] gi|2...   108   3e-22
ref|NP_001176331.1| Os11g0130500 [Oryza sativa Japonica Group] g...    62   5e-08
ref|NP_001176770.1| Os12g0127400 [Oryza sativa Japonica Group] g...    62   6e-08
emb|CAN81149.1| hypothetical protein VITISV_020815 [Vitis vinifera]    62   6e-08
gb|EAY82142.1| hypothetical protein OsI_37336 [Oryza sativa Indi...    62   6e-08

>ref|XP_002323541.1| predicted protein [Populus trichocarpa] gi|222868171|gb|EEF05302.1|
           predicted protein [Populus trichocarpa]
          Length = 426

 Score =  108 bits (271), Expect = 3e-22
 Identities = 52/100 (52%), Positives = 68/100 (68%)
 Frame = +2

Query: 5   KFVRAVDQFLQLCTSPKIYSFEVWYCLGSESACHIDRWVSFAIRKQTKELCLNFSLVPQS 184
           KFV AVDQ L  C  PKI + +V + LG + A H+DRWVSF+   Q +++  +FS  P+S
Sbjct: 62  KFVTAVDQVLLACRGPKIGTVKVRFGLGDDHAFHVDRWVSFSSAMQVEKIAFDFSCSPKS 121

Query: 185 CELYSFPCHLLPQGKASQLKHLNLKSCVLKPSPEFANCLN 304
           C  Y+FPCH+LP  KAS LKHL L SC L+ SP+F + LN
Sbjct: 122 CGSYNFPCHILPADKASHLKHLCLVSCTLRLSPKFTSQLN 161


>ref|NP_001176331.1| Os11g0130500 [Oryza sativa Japonica Group]
           gi|255679751|dbj|BAH95059.1| Os11g0130500 [Oryza sativa
           Japonica Group]
          Length = 244

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 37/105 (35%), Positives = 55/105 (52%), Gaps = 6/105 (5%)
 Frame = +2

Query: 5   KFVRAVDQFLQLCTSPKIYSFEVWYCLGSESACHIDRWVSFAIRKQTKELCLNFSLVPQS 184
           KF++ VD  L+      +  F V + L +E A H++ WV+FAI  + + + L+FS   +S
Sbjct: 131 KFIKRVDAILEKHCGTMVNKFAVKFGLSNEHANHVNGWVAFAIASKARVIILDFSPDWKS 190

Query: 185 CE-LYSFPCHLLPQGKASQLKHLNLKSCVLKPSPEFA-----NCL 301
            E  Y FPCH+  +   S L+ L L S  L P  +F      NCL
Sbjct: 191 HENKYDFPCHIFDKHNGSYLEALRLDSVTLNPPLDFCGFATLNCL 235


>ref|NP_001176770.1| Os12g0127400 [Oryza sativa Japonica Group]
           gi|77553566|gb|ABA96362.1| F-box domain containing
           protein, expressed [Oryza sativa Japonica Group]
           gi|125578377|gb|EAZ19523.1| hypothetical protein
           OsJ_35088 [Oryza sativa Japonica Group]
           gi|255670007|dbj|BAH95498.1| Os12g0127400 [Oryza sativa
           Japonica Group]
          Length = 358

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
 Frame = +2

Query: 5   KFVRAVDQFLQLCTSPKIYSFEVWYCLGSESACHIDRWVSFAIRKQTKELCLNFSLVPQS 184
           KF++ VD  L+      +  F V + L +E A H++ WV+FAI  + + + L+FS   +S
Sbjct: 131 KFIKRVDAILEKHCGTMVNKFAVKFGLSNEHANHVNGWVAFAIASKARVIILDFSPDWKS 190

Query: 185 CE-LYSFPCHLLPQGKASQLKHLNLKSCVLKPSPEFANCLN 304
            E  Y FPCH+  +   S L+ L L S  L P  +F    N
Sbjct: 191 HENNYDFPCHIFDKHNGSYLEALRLDSVTLNPPLDFCGFAN 231


>emb|CAN81149.1| hypothetical protein VITISV_020815 [Vitis vinifera]
          Length = 1789

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 39/107 (36%), Positives = 56/107 (52%), Gaps = 14/107 (13%)
 Frame = +2

Query: 5    KFVRAVDQFLQLCTS-PKIYSFEVWYCLGSESACHIDRWVSFAIRKQTKELCLNFS---- 169
            KFV  VDQF+   +  PKI SF + + LG E   HID+W++ A+ K  + + L+ S    
Sbjct: 1392 KFVERVDQFMYYRSQGPKINSFSIHFPLGKEFMSHIDQWITCAVMKGVENIDLDLSEYFS 1451

Query: 170  -------LVPQSCELYSFPCHL--LPQGKASQLKHLNLKSCVLKPSP 283
                       + ++Y FPC L  +P G+ + LKHL L SC L   P
Sbjct: 1452 FNLKRDDTSSTAFQIYEFPCRLFSVPGGRCT-LKHLRLASCHLSALP 1497


>gb|EAY82142.1| hypothetical protein OsI_37336 [Oryza sativa Indica Group]
          Length = 446

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
 Frame = +2

Query: 5   KFVRAVDQFLQLCTSPKIYSFEVWYCLGSESACHIDRWVSFAIRKQTKELCLNFSLVPQS 184
           KF++ VD  L+      +  F V + L +E A H++ WV+FAI  + + + L+FS   +S
Sbjct: 131 KFIKRVDAILEKHCGTMVNKFAVKFGLSNEHANHVNGWVAFAIASKARVIILDFSPDWKS 190

Query: 185 CE-LYSFPCHLLPQGKASQLKHLNLKSCVLKPSPEFANCLN 304
            E  Y FPCH+  +   S L+ L L S  L P  +F    N
Sbjct: 191 HENNYDFPCHIFDKHNGSYLEALRLDSVTLNPPLDFCGFAN 231


Top