BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00036124
         (285 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_567266.1| RNA-directed DNA polymerase (reverse transcript...    55   2e-09
gb|ABK28243.1| unknown [Arabidopsis thaliana]                          55   2e-09
gb|ABE65512.1| hypothetical protein At4g04650 [Arabidopsis thali...    55   2e-09
ref|NP_175039.1| RNA-directed DNA polymerase (reverse transcript...    52   4e-09
ref|XP_002313562.1| predicted protein [Populus trichocarpa] gi|2...    54   6e-07

>ref|NP_567266.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
           protein [Arabidopsis thaliana]
           gi|5732057|gb|AAD48956.1|AF149414_5 contains similarity
           to a family of Arabidopsis thaliana predicted proteins,
           which have similarity to reverse transcriptases; see
           T14P8.10 (GB:AF069298) [Arabidopsis thaliana]
           gi|7267223|emb|CAB80830.1| AT4g04650 [Arabidopsis
           thaliana] gi|332657009|gb|AEE82409.1| RNA-directed DNA
           polymerase (reverse transcriptase)-related family
           protein [Arabidopsis thaliana]
          Length = 332

 Score = 55.5 bits (132), Expect(2) = 2e-09
 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
 Frame = -1

Query: 285 EREDKVVWTASLHG---NFTLNDTYNAIRKTNHTVSWSK*VWYSNRIPRHSFIAWILLKG 115
           + +D  +W   LH     F+   T++A+   +HTV W K VW+ N +P+H+FI W++   
Sbjct: 93  QHDDSFLWKTDLHAPSNRFSAPRTWSALHPQSHTVPWHKAVWFKNHVPKHAFICWVVAWN 152

Query: 114 GLKT 103
            L T
Sbjct: 153 RLHT 156



 Score = 31.6 bits (70), Expect(2) = 2e-09
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 92  QLKEWKVVQSAACVLCLGHTEIDAHLFHDC 3
           +L+ W +   A C+LC  H +  AHLF +C
Sbjct: 159 RLQNWGLSIPAECLLCNAHDDSRAHLFFEC 188


>gb|ABK28243.1| unknown [Arabidopsis thaliana]
          Length = 297

 Score = 55.5 bits (132), Expect(2) = 2e-09
 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
 Frame = -1

Query: 285 EREDKVVWTASLHG---NFTLNDTYNAIRKTNHTVSWSK*VWYSNRIPRHSFIAWILLKG 115
           + +D  +W   LH     F+   T++A+   +HTV W K VW+ N +P+H+FI W++   
Sbjct: 93  QHDDSFLWKTDLHAPSNRFSAPRTWSALHPQSHTVPWHKAVWFKNHVPKHAFICWVVAWN 152

Query: 114 GLKT 103
            L T
Sbjct: 153 RLHT 156



 Score = 31.6 bits (70), Expect(2) = 2e-09
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 92  QLKEWKVVQSAACVLCLGHTEIDAHLFHDC 3
           +L+ W +   A C+LC  H +  AHLF +C
Sbjct: 159 RLQNWGLSIPAECLLCNAHDDSRAHLFFEC 188


>gb|ABE65512.1| hypothetical protein At4g04650 [Arabidopsis thaliana]
          Length = 296

 Score = 55.5 bits (132), Expect(2) = 2e-09
 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
 Frame = -1

Query: 285 EREDKVVWTASLHG---NFTLNDTYNAIRKTNHTVSWSK*VWYSNRIPRHSFIAWILLKG 115
           + +D  +W   LH     F+   T++A+   +HTV W K VW+ N +P+H+FI W++   
Sbjct: 93  QHDDSFLWKTDLHAPSNRFSAPRTWSALHPQSHTVPWHKAVWFKNHVPKHAFICWVVAWN 152

Query: 114 GLKT 103
            L T
Sbjct: 153 RLHT 156



 Score = 31.6 bits (70), Expect(2) = 2e-09
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 92  QLKEWKVVQSAACVLCLGHTEIDAHLFHDC 3
           +L+ W +   A C+LC  H +  AHLF +C
Sbjct: 159 RLQNWGLSIPAECLLCNAHDDSRAHLFFEC 188


>ref|NP_175039.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
           protein [Arabidopsis thaliana]
           gi|332193871|gb|AEE31992.1| RNA-directed DNA polymerase
           (reverse transcriptase)-related family protein
           [Arabidopsis thaliana]
          Length = 320

 Score = 52.0 bits (123), Expect(2) = 4e-09
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
 Frame = -1

Query: 285 EREDKVVWTASLHGN---FTLNDTYNAIRKTNHTVSWSK*VWYSNRIPRHSFIAWILLKG 115
           + +D  +W   LH     F+   T  A+   NH V W K VW+ N +P+H+FI W++   
Sbjct: 115 QHDDSFIWKTDLHAPSNIFSTAKTSLALHPQNHIVPWYKAVWFKNHVPKHAFICWVVAWN 174

Query: 114 GLKT 103
            L T
Sbjct: 175 RLHT 178



 Score = 33.5 bits (75), Expect(2) = 4e-09
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 92  QLKEWKVVQSAACVLCLGHTEIDAHLFHDC 3
           +L+ W +   A C+LC  H E  AHLF +C
Sbjct: 181 RLRSWGLSIPAVCLLCNSHDESRAHLFFEC 210


>ref|XP_002313562.1| predicted protein [Populus trichocarpa] gi|222849970|gb|EEE87517.1|
           predicted protein [Populus trichocarpa]
          Length = 331

 Score = 54.3 bits (129), Expect(2) = 6e-07
 Identities = 20/60 (33%), Positives = 37/60 (61%)
 Frame = -1

Query: 282 REDKVVWTASLHGNFTLNDTYNAIRKTNHTVSWSK*VWYSNRIPRHSFIAWILLKGGLKT 103
           ++D++VW  S +  F++   +  +R+  H V W   VW+ N +PRHSF+ W++++  L T
Sbjct: 128 QKDEIVWLDSPNHRFSVKVAWEQLRRHRHMVEWHDIVWFKNAVPRHSFLLWMVVQQKLTT 187



 Score = 23.9 bits (50), Expect(2) = 6e-07
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 56  CVLCLGHTEIDAHLFHDC 3
           C LCL + E   HLF +C
Sbjct: 202 CSLCLRNNEDHNHLFFEC 219