BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00036053
         (258 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002516590.1| pentatricopeptide repeat-containing protein,...    99   3e-19
ref|XP_002884209.1| pentatricopeptide repeat-containing protein ...    98   8e-19
ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containi...    97   2e-18
ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containi...    94   2e-17
ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis th...    92   4e-17

>ref|XP_002516590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223544410|gb|EEF45931.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 517

 Score = 99.4 bits (246), Expect = 3e-19
 Identities = 52/85 (61%), Positives = 59/85 (69%)
 Frame = -3

Query: 256 LSASRTCRDLETAVIAMEQLLKLEPDDIGNYVLLSNIFADLGEWESVSXXXXXXXXXXXX 77
           LS+ RT  ++E AVIAME L +LEPDD GNYVLLSNI+ADLG+W+ VS            
Sbjct: 403 LSSCRTHCNIEVAVIAMEHLEELEPDDTGNYVLLSNIYADLGKWDDVSRMRKLVRSKRMK 462

Query: 76  XTPGCSLIEVNNEVHEFVVGDDSNP 2
            TPGCSLIEVNN   EFV GDDS P
Sbjct: 463 KTPGCSLIEVNNVAQEFVSGDDSKP 487


>ref|XP_002884209.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297330049|gb|EFH60468.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 534

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 48/85 (56%), Positives = 62/85 (72%)
 Frame = -3

Query: 256 LSASRTCRDLETAVIAMEQLLKLEPDDIGNYVLLSNIFADLGEWESVSXXXXXXXXXXXX 77
           LS+ RT  +L+ A++AM+ L+++EPDD+GNYVLL+NI+ADLG+WE VS            
Sbjct: 417 LSSCRTKGNLDVALVAMDHLVEVEPDDMGNYVLLANIYADLGKWEDVSRLRKIIRKENMK 476

Query: 76  XTPGCSLIEVNNEVHEFVVGDDSNP 2
            TPGCSLIEVNN V EFV GD+S P
Sbjct: 477 KTPGCSLIEVNNIVQEFVAGDNSKP 501


>ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Glycine max]
          Length = 535

 Score = 96.7 bits (239), Expect = 2e-18
 Identities = 51/85 (60%), Positives = 59/85 (69%)
 Frame = -3

Query: 256 LSASRTCRDLETAVIAMEQLLKLEPDDIGNYVLLSNIFADLGEWESVSXXXXXXXXXXXX 77
           LS+ R   +LE AV+AMEQLLKLEP++ GNYVLL+NI+A L +WE VS            
Sbjct: 414 LSSCRIHHNLEIAVVAMEQLLKLEPEESGNYVLLANIYAKLDKWEGVSNVRKLIRSKRIK 473

Query: 76  XTPGCSLIEVNNEVHEFVVGDDSNP 2
            TPGCSLIEVNN V EFV GDDS P
Sbjct: 474 KTPGCSLIEVNNLVQEFVSGDDSKP 498


>ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Vitis vinifera]
          Length = 541

 Score = 93.6 bits (231), Expect = 2e-17
 Identities = 49/85 (57%), Positives = 58/85 (68%)
 Frame = -3

Query: 256 LSASRTCRDLETAVIAMEQLLKLEPDDIGNYVLLSNIFADLGEWESVSXXXXXXXXXXXX 77
           LS+ R+  +LE AVIAME LL+LEP D GNYVLLSN++ADLG+W+ VS            
Sbjct: 425 LSSCRSHSNLEIAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMK 484

Query: 76  XTPGCSLIEVNNEVHEFVVGDDSNP 2
            TPGCS IEV+N V EF  GDDS P
Sbjct: 485 KTPGCSSIEVDNMVQEFASGDDSKP 509


>ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
           gi|75337271|sp|Q9SIL5.1|PP165_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g20540 gi|4586036|gb|AAD25654.1| unknown protein
           [Arabidopsis thaliana] gi|67633530|gb|AAY78689.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana] gi|330251931|gb|AEC07025.1| mitochondrial
           editing factor 21 [Arabidopsis thaliana]
          Length = 534

 Score = 92.0 bits (227), Expect = 4e-17
 Identities = 47/85 (55%), Positives = 61/85 (71%)
 Frame = -3

Query: 256 LSASRTCRDLETAVIAMEQLLKLEPDDIGNYVLLSNIFADLGEWESVSXXXXXXXXXXXX 77
           LS+ RT  +L+ A++AM+ L++LEP+D+GNYVLL+NI+ADLG+WE VS            
Sbjct: 417 LSSCRTPGNLDVALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMK 476

Query: 76  XTPGCSLIEVNNEVHEFVVGDDSNP 2
            TPG SLIEVNN V EFV GD+S P
Sbjct: 477 KTPGGSLIEVNNIVQEFVSGDNSKP 501