BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00036024
         (242 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|73210...    87   2e-15
gb|AAD37021.1| putative non-LTR retrolelement reverse transcript...    84   9e-15
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ...    80   1e-13
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta...    79   3e-13
gb|AAB48350.1| reverse transcriptase, partial [Arabidopsis thali...    78   8e-13

>emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|7321072|emb|CAB82119.1|
           putative protein [Arabidopsis thaliana]
          Length = 947

 Score = 86.7 bits (213), Expect = 2e-15
 Identities = 36/65 (55%), Positives = 48/65 (73%)
 Frame = -2

Query: 241 GPDGFQGIFYQQCWDVVGKSIIDCVKDFFINGKMNPRLNDTFLTLIPKISNPDHVSKFRP 62
           GPDG+Q IFYQ CW+VVG S+I    DFF +G + P+ ND  + LIPK+  P+ +++FRP
Sbjct: 205 GPDGYQPIFYQSCWEVVGNSVIRFALDFFSSGILPPQTNDALVVLIPKVPKPERMNQFRP 264

Query: 61  ISLCN 47
           ISLCN
Sbjct: 265 ISLCN 269


>gb|AAD37021.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 732

 Score = 84.3 bits (207), Expect = 9e-15
 Identities = 35/68 (51%), Positives = 47/68 (69%)
 Frame = -2

Query: 241 GPDGFQGIFYQQCWDVVGKSIIDCVKDFFINGKMNPRLNDTFLTLIPKISNPDHVSKFRP 62
           GPDGFQ +FYQ CWD+VG S+   V DFF +GK+    ND  + LI K+  P+ +++FRP
Sbjct: 8   GPDGFQPVFYQDCWDIVGDSVSRFVLDFFASGKLPEGTNDAIVVLIAKVLKPERITQFRP 67

Query: 61  ISLCNFCY 38
           ISLCN  +
Sbjct: 68  ISLCNVLF 75


>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
           gi|7268307|emb|CAB78601.1| reverse transcriptase like
           protein [Arabidopsis thaliana]
          Length = 929

 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 31/68 (45%), Positives = 48/68 (70%)
 Frame = -2

Query: 241 GPDGFQGIFYQQCWDVVGKSIIDCVKDFFINGKMNPRLNDTFLTLIPKISNPDHVSKFRP 62
           GPDG+Q +FYQQCW+ VG+S+   V +FF +G +    ND  L L+ K++ P+ +++FRP
Sbjct: 263 GPDGYQPVFYQQCWETVGESVSKFVMEFFESGVLPKSTNDVLLVLLAKVAKPERITQFRP 322

Query: 61  ISLCNFCY 38
           +SLCN  +
Sbjct: 323 VSLCNVLF 330


>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1231

 Score = 79.3 bits (194), Expect = 3e-13
 Identities = 32/68 (47%), Positives = 45/68 (66%)
 Frame = -2

Query: 241 GPDGFQGIFYQQCWDVVGKSIIDCVKDFFINGKMNPRLNDTFLTLIPKISNPDHVSKFRP 62
           GPDG+Q +FYQQCW+ VG S+   V +FF  G +    ND  L LI K++ P+ + +FRP
Sbjct: 311 GPDGYQPVFYQQCWETVGPSVTRFVLEFFETGVLPASTNDALLVLIAKVAKPERIQQFRP 370

Query: 61  ISLCNFCY 38
           +SLCN  +
Sbjct: 371 VSLCNVLF 378


>gb|AAB48350.1| reverse transcriptase, partial [Arabidopsis thaliana]
          Length = 198

 Score = 77.8 bits (190), Expect = 8e-13
 Identities = 33/68 (48%), Positives = 45/68 (66%)
 Frame = -2

Query: 241 GPDGFQGIFYQQCWDVVGKSIIDCVKDFFINGKMNPRLNDTFLTLIPKISNPDHVSKFRP 62
           GPDG Q +FYQ  WDVVG S+   V DFF +G +  + ND  + LIPK+  P+ +++FR 
Sbjct: 3   GPDGIQAVFYQDSWDVVGTSVTKFVLDFFRDGVLPEKTNDVLVALIPKVLKPEKITQFRA 62

Query: 61  ISLCNFCY 38
           ISLCN  +
Sbjct: 63  ISLCNVLF 70