BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00035995
         (489 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI40152.3| unnamed protein product [Vitis vinifera]              166   1e-39
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub...   166   1e-39
gb|AAY89359.1| RNA polymerase IV largest subunit [Solanum lycope...   164   7e-39
gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinac...   159   2e-37
ref|XP_002303926.1| predicted protein [Populus trichocarpa] gi|2...   153   2e-35

>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
          Length = 1890

 Score =  166 bits (421), Expect = 1e-39
 Identities = 87/163 (53%), Positives = 111/163 (68%), Gaps = 1/163 (0%)
 Frame = +2

Query: 2    KDMNRSLQEVLQNCHETISFFRRRKKNSLGGFLKNISLSVSECCCLEQSNDTEWCKS-CL 178
            +D+N S+QEV Q C ETI+ FR  KK ++G F K I LS  ECC  + S  ++     CL
Sbjct: 1011 QDLNVSMQEVCQKCEETINSFR--KKKNVGPFFKKIILSFRECCTFQHSCQSKGSDMPCL 1068

Query: 179  QFSWRLDISSLSLETTSQIMANMICPILLDTIIKGDCRVQEANIIWSSPDTTNWVKTHSR 358
             F W+ +    +LE    I+A+ ICP+LL TIIKGD RV   NIIW SPDTT W++   +
Sbjct: 1069 LFFWQGNRDD-NLEQILHILAHKICPVLLQTIIKGDSRVCTVNIIWISPDTTTWIRNPCK 1127

Query: 359  AQHGELALEIVLEKKFVKQHGDAWRLALDSCLPVIHLIDTARS 487
            ++ GELAL+IVLEK  VKQ GDAWR+ LD+CLPV+HLIDT RS
Sbjct: 1128 SRKGELALDIVLEKAAVKQRGDAWRIVLDACLPVLHLIDTRRS 1170


>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
          Length = 1830

 Score =  166 bits (421), Expect = 1e-39
 Identities = 87/163 (53%), Positives = 111/163 (68%), Gaps = 1/163 (0%)
 Frame = +2

Query: 2    KDMNRSLQEVLQNCHETISFFRRRKKNSLGGFLKNISLSVSECCCLEQSNDTEWCKS-CL 178
            +D+N S+QEV Q C ETI+ FR  KK ++G F K I LS  ECC  + S  ++     CL
Sbjct: 951  QDLNVSMQEVCQKCEETINSFR--KKKNVGPFFKKIILSFRECCTFQHSCQSKGSDMPCL 1008

Query: 179  QFSWRLDISSLSLETTSQIMANMICPILLDTIIKGDCRVQEANIIWSSPDTTNWVKTHSR 358
             F W+ +    +LE    I+A+ ICP+LL TIIKGD RV   NIIW SPDTT W++   +
Sbjct: 1009 LFFWQGNRDD-NLEQILHILAHKICPVLLQTIIKGDSRVCTVNIIWISPDTTTWIRNPCK 1067

Query: 359  AQHGELALEIVLEKKFVKQHGDAWRLALDSCLPVIHLIDTARS 487
            ++ GELAL+IVLEK  VKQ GDAWR+ LD+CLPV+HLIDT RS
Sbjct: 1068 SRKGELALDIVLEKAAVKQRGDAWRIVLDACLPVLHLIDTRRS 1110


>gb|AAY89359.1| RNA polymerase IV largest subunit [Solanum lycopersicum]
          Length = 1127

 Score =  164 bits (415), Expect = 7e-39
 Identities = 88/163 (53%), Positives = 113/163 (69%), Gaps = 1/163 (0%)
 Frame = +2

Query: 2   KDMNRSLQEVLQNCHETISFFRRRKKNSLGGFLKNISLSVSECCCLEQSNDTEWCKS-CL 178
           +++  S+ EV + C E IS FR +KK  +G   K I LSVSE C    ++ ++   + CL
Sbjct: 502 ENLGISVLEVHERCQENISSFRXKKK--IGNLFKRIVLSVSEFCSFCHNSGSKCLNAPCL 559

Query: 179 QFSWRLDISSLSLETTSQIMANMICPILLDTIIKGDCRVQEANIIWSSPDTTNWVKTHSR 358
           +FSW  D S   LE  S I+A+MI PILLDT+IKGD RV  ANI W SPDT +W+++ S+
Sbjct: 560 RFSWP-DASDDHLERVSHILADMIXPILLDTVIKGDPRVSSANIAWISPDTMSWIRSPSK 618

Query: 359 AQHGELALEIVLEKKFVKQHGDAWRLALDSCLPVIHLIDTARS 487
           +Q GELAL+IVLEK+ VK  GDAWR  +DSCLPVIHLIDT RS
Sbjct: 619 SQRGELALDIVLEKEAVKXRGDAWRXLMDSCLPVIHLIDTTRS 661


>gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinacia oleracea]
          Length = 1902

 Score =  159 bits (402), Expect = 2e-37
 Identities = 80/157 (50%), Positives = 106/157 (67%), Gaps = 1/157 (0%)
 Frame = +2

Query: 20   LQEVLQNCHETISFFRRRKKNSLGGFLKNISLSVSECCCLEQSNDTEWCKS-CLQFSWRL 196
            + ++LQ C E ++  R++KK   G   K I LSVS+CC    S D++W    CL+F W+ 
Sbjct: 756  MHDILQKCEEQVNLLRKKKK--YGYHFKRILLSVSDCCFFNHS-DSKWTDMPCLKFFWQ- 811

Query: 197  DISSLSLETTSQIMANMICPILLDTIIKGDCRVQEANIIWSSPDTTNWVKTHSRAQHGEL 376
            D++   LE T  IMA+MICP+LLDTIIKGD R+   NIIW +P TT WV++   +  GEL
Sbjct: 812  DMTDTDLERTKHIMADMICPVLLDTIIKGDPRISTVNIIWINPGTTTWVQSPCSSTKGEL 871

Query: 377  ALEIVLEKKFVKQHGDAWRLALDSCLPVIHLIDTARS 487
            A+E+ LEK+ V+  GDAWR+ LD CLPV HLIDT RS
Sbjct: 872  AVEVALEKEAVRLTGDAWRIVLDCCLPVFHLIDTRRS 908


>ref|XP_002303926.1| predicted protein [Populus trichocarpa] gi|222841358|gb|EEE78905.1|
           predicted protein [Populus trichocarpa]
          Length = 1020

 Score =  153 bits (386), Expect = 2e-35
 Identities = 84/190 (44%), Positives = 112/190 (58%), Gaps = 28/190 (14%)
 Frame = +2

Query: 2   KDMNRSLQEVLQNCHETISFFRRRKKNSLGGFLKNISLSVSECCCLEQSNDTEWCKSCLQ 181
           +D+N + Q +L+ C ET++ FR++KK  +G   K   L VSE C  +Q  D      CL 
Sbjct: 28  QDLNITAQVILEKCQETVNTFRKKKK--VGNLFKKTILLVSESCSFQQCIDES---PCLM 82

Query: 182 FSWRLDISSLSLETTSQIMANMICPILLDTIIK--------------------------- 280
           F W+     + LE TS I+A+MICP+LL+TIIK                           
Sbjct: 83  FFWQ-GADDVHLERTSNILADMICPVLLETIIKVYIGLTISIRHSVQRGSKRTWCSSINA 141

Query: 281 -GDCRVQEANIIWSSPDTTNWVKTHSRAQHGELALEIVLEKKFVKQHGDAWRLALDSCLP 457
            GD R+  ANIIW++P+T  W++  SR Q GELAL+IVLEK  VK+ GDAWR+ LDSCLP
Sbjct: 142 CGDHRISCANIIWATPETNTWIRNPSRTQKGELALDIVLEKSVVKKSGDAWRIVLDSCLP 201

Query: 458 VIHLIDTARS 487
           V+HLI+T RS
Sbjct: 202 VLHLINTTRS 211