BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00035968
         (466 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN62101.1| hypothetical protein VITISV_033310 [Vitis vinifera]   223   2e-56
ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containi...   222   3e-56
gb|EAY75608.1| hypothetical protein OsI_03512 [Oryza sativa Indi...   190   9e-47
ref|NP_001044067.1| Os01g0715900 [Oryza sativa Japonica Group] g...   190   9e-47
ref|XP_002458407.1| hypothetical protein SORBIDRAFT_03g032890 [S...   186   2e-45

>emb|CAN62101.1| hypothetical protein VITISV_033310 [Vitis vinifera]
          Length = 396

 Score =  223 bits (567), Expect = 2e-56
 Identities = 107/154 (69%), Positives = 128/154 (83%)
 Frame = +1

Query: 4   KPNDVTFVSVVSACSQLGSVEAAEHIGNYIESLGFVSNVYVASALLDMYSKCGNVRKARQ 183
           KPNDVT VSV+SAC+QLGSVE  E IG+Y+ES G +SNVYVASALL MYSKCGN+ KARQ
Sbjct: 104 KPNDVTLVSVLSACAQLGSVETGERIGSYVESRGLISNVYVASALLGMYSKCGNIIKARQ 163

Query: 184 LFDQMNHRDVVSWNSMIGGLAVNGFAREAIDLFMEMKVSEVKPNDITFVGLLTACTHAGL 363
           +FD++  RD V+WNSMI GLA+NGFA +AI L+  MK  EVKPN+ITFVGLLTACTHAG 
Sbjct: 164 IFDKLPQRDNVTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVGLLTACTHAGH 223

Query: 364 IELGCGFFKSMTTDYNIVPKVEHCACIVALYCKS 465
           +ELG  FF+SM +D+NI P +EH ACIV L+C+S
Sbjct: 224 VELGLEFFRSMRSDHNISPNIEHFACIVDLFCRS 257



 Score =  116 bits (291), Expect = 2e-24
 Identities = 57/153 (37%), Positives = 92/153 (60%)
 Frame = +1

Query: 4   KPNDVTFVSVVSACSQLGSVEAAEHIGNYIESLGFVSNVYVASALLDMYSKCGNVRKARQ 183
           +P+++T  +V+S C++LG +E    I    ++    SN+ V++A+L+MY KCG V   R 
Sbjct: 3   EPBEITLATVLSICAKLGDLEMGLRIKKLXDNKNLGSNMIVSTAMLEMYVKCGAVDDGRL 62

Query: 184 LFDQMNHRDVVSWNSMIGGLAVNGFAREAIDLFMEMKVSEVKPNDITFVGLLTACTHAGL 363
           +FD M  RDVV W++MI G A NG + EA++LF  MK +++KPND+T V +L+AC   G 
Sbjct: 63  VFDHMARRDVVXWSAMIAGYAQNGRSNEALELFEXMKSAQIKPNDVTLVSVLSACAQLGS 122

Query: 364 IELGCGFFKSMTTDYNIVPKVEHCACIVALYCK 462
           +E G     S      ++  V   + ++ +Y K
Sbjct: 123 VETG-ERIGSYVESRGLISNVYVASALLGMYSK 154


>ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 618

 Score =  222 bits (565), Expect = 3e-56
 Identities = 106/154 (68%), Positives = 128/154 (83%)
 Frame = +1

Query: 4   KPNDVTFVSVVSACSQLGSVEAAEHIGNYIESLGFVSNVYVASALLDMYSKCGNVRKARQ 183
           KPNDVT VSV+SAC+QLGSVE  E IG+Y+ES G +SNVYVASALL MYSKCGN+ KARQ
Sbjct: 326 KPNDVTLVSVLSACAQLGSVETGERIGSYVESRGLISNVYVASALLGMYSKCGNIIKARQ 385

Query: 184 LFDQMNHRDVVSWNSMIGGLAVNGFAREAIDLFMEMKVSEVKPNDITFVGLLTACTHAGL 363
           +FD++  RD V+WNSMI GLA+NGFA +AI L+  MK  EVKPN+ITFVGL+TACTHAG 
Sbjct: 386 IFDKLPQRDNVTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVGLMTACTHAGH 445

Query: 364 IELGCGFFKSMTTDYNIVPKVEHCACIVALYCKS 465
           +ELG  FF+SM +D+NI P +EH ACIV L+C+S
Sbjct: 446 VELGLEFFRSMRSDHNISPNIEHFACIVDLFCRS 479



 Score =  117 bits (294), Expect = 8e-25
 Identities = 58/153 (37%), Positives = 93/153 (60%)
 Frame = +1

Query: 4   KPNDVTFVSVVSACSQLGSVEAAEHIGNYIESLGFVSNVYVASALLDMYSKCGNVRKARQ 183
           +PN++T  +V+S C++LG +E    I    ++    SN+ V++A+L+MY KCG V   R 
Sbjct: 225 EPNEITLATVLSICAKLGDLEMGLRIKKLNDNKNLGSNMIVSTAMLEMYVKCGAVDDGRL 284

Query: 184 LFDQMNHRDVVSWNSMIGGLAVNGFAREAIDLFMEMKVSEVKPNDITFVGLLTACTHAGL 363
           +FD M  RDVV+W++MI G A NG + EA++LF  MK +++KPND+T V +L+AC   G 
Sbjct: 285 VFDHMARRDVVTWSAMIAGYAQNGRSNEALELFENMKSAQIKPNDVTLVSVLSACAQLGS 344

Query: 364 IELGCGFFKSMTTDYNIVPKVEHCACIVALYCK 462
           +E G     S      ++  V   + ++ +Y K
Sbjct: 345 VETG-ERIGSYVESRGLISNVYVASALLGMYSK 376



 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 44/179 (24%), Positives = 80/179 (44%), Gaps = 31/179 (17%)
 Frame = +1

Query: 19  TFVSVVSACSQLGSVEAAEHIGNYIESLGFVSNVYVASALLDMYSKC------------- 159
           T   +  +C+ L +++  + + + +   GF S+V+  +AL++ Y+K              
Sbjct: 98  TIPPIFKSCASLLAIDVGKQVHSLVIRYGFHSSVFCQNALINFYAKINDLGSAELIFDGI 157

Query: 160 ------------------GNVRKARQLFDQMNHRDVVSWNSMIGGLAVNGFAREAIDLFM 285
                             G V  AR+LFD+M  R +VSWN+MI   A NG   +   +F 
Sbjct: 158 LVKDTIAYNCLISAYSRSGEVLAARELFDKMRDRSIVSWNAMISCYAQNGDYHKGWIIFQ 217

Query: 286 EMKVSEVKPNDITFVGLLTACTHAGLIELGCGFFKSMTTDYNIVPKVEHCACIVALYCK 462
            M+    +PN+IT   +L+ C   G +E+G    K +  + N+   +     ++ +Y K
Sbjct: 218 RMQDEMCEPNEITLATVLSICAKLGDLEMGLR-IKKLNDNKNLGSNMIVSTAMLEMYVK 275


>gb|EAY75608.1| hypothetical protein OsI_03512 [Oryza sativa Indica Group]
          Length = 608

 Score =  190 bits (483), Expect = 9e-47
 Identities = 88/154 (57%), Positives = 119/154 (77%)
 Frame = +1

Query: 4   KPNDVTFVSVVSACSQLGSVEAAEHIGNYIESLGFVSNVYVASALLDMYSKCGNVRKARQ 183
           KPN+VT V V+SAC+QLGS E    IG+++ES       Y+ SAL+DMY+KCG+V +AR 
Sbjct: 314 KPNEVTLVGVLSACAQLGSDELGGQIGSHVESQNLPLTSYLGSALIDMYTKCGHVGRARS 373

Query: 184 LFDQMNHRDVVSWNSMIGGLAVNGFAREAIDLFMEMKVSEVKPNDITFVGLLTACTHAGL 363
           +F++M H+ V++WNSM+ GLA+NGFA++AI L+ EM   +V+PN+ITFV LLTACTHAGL
Sbjct: 374 VFNRMEHKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQPNEITFVALLTACTHAGL 433

Query: 364 IELGCGFFKSMTTDYNIVPKVEHCACIVALYCKS 465
           ++ G  FFK M T +++ P+VEHCACIV L CKS
Sbjct: 434 VDQGMSFFKEMKTIHHVSPQVEHCACIVDLLCKS 467



 Score =  103 bits (257), Expect = 1e-20
 Identities = 50/124 (40%), Positives = 79/124 (63%)
 Frame = +1

Query: 4   KPNDVTFVSVVSACSQLGSVEAAEHIGNYIESLGFVSNVYVASALLDMYSKCGNVRKARQ 183
           +PN +T  ++ S C++ G +E  +   + I     + N+ V +AL++MY KC  + +AR+
Sbjct: 214 RPNAITIATMFSICAKTGDLETGKWARSLIAEQD-LQNMIVHTALMEMYVKCQAIDEARR 272

Query: 184 LFDQMNHRDVVSWNSMIGGLAVNGFAREAIDLFMEMKVSEVKPNDITFVGLLTACTHAGL 363
            FD+M  RDVV+W++MI G A NG   E+++LF  MK +  KPN++T VG+L+AC   G 
Sbjct: 273 EFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGVLSACAQLGS 332

Query: 364 IELG 375
            ELG
Sbjct: 333 DELG 336



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 40/111 (36%), Positives = 60/111 (54%)
 Frame = +1

Query: 130 SALLDMYSKCGNVRKARQLFDQMNHRDVVSWNSMIGGLAVNGFAREAIDLFMEMKVSEVK 309
           + L+  YSK G+V KAR+LFD M  R   SWNSMI   A  G  +EA+ LF  M     +
Sbjct: 155 NCLITGYSKSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEGAR 214

Query: 310 PNDITFVGLLTACTHAGLIELGCGFFKSMTTDYNIVPKVEHCACIVALYCK 462
           PN IT   + + C   G +E G  + +S+  + ++   + H A ++ +Y K
Sbjct: 215 PNAITIATMFSICAKTGDLETG-KWARSLIAEQDLQNMIVHTA-LMEMYVK 263


>ref|NP_001044067.1| Os01g0715900 [Oryza sativa Japonica Group]
           gi|20160882|dbj|BAB89820.1| pentatricopeptide (PPR)
           repeat-containing protein-like [Oryza sativa Japonica
           Group] gi|113533598|dbj|BAF05981.1| Os01g0715900 [Oryza
           sativa Japonica Group] gi|125571815|gb|EAZ13330.1|
           hypothetical protein OsJ_03251 [Oryza sativa Japonica
           Group]
          Length = 608

 Score =  190 bits (483), Expect = 9e-47
 Identities = 88/154 (57%), Positives = 119/154 (77%)
 Frame = +1

Query: 4   KPNDVTFVSVVSACSQLGSVEAAEHIGNYIESLGFVSNVYVASALLDMYSKCGNVRKARQ 183
           KPN+VT V V+SAC+QLGS E    IG+++ES       Y+ SAL+DMY+KCG+V +AR 
Sbjct: 314 KPNEVTLVGVLSACAQLGSDELGGQIGSHVESQNLPLTSYLGSALIDMYTKCGHVGRARS 373

Query: 184 LFDQMNHRDVVSWNSMIGGLAVNGFAREAIDLFMEMKVSEVKPNDITFVGLLTACTHAGL 363
           +F++M H+ V++WNSM+ GLA+NGFA++AI L+ EM   +V+PN+ITFV LLTACTHAGL
Sbjct: 374 VFNRMEHKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQPNEITFVALLTACTHAGL 433

Query: 364 IELGCGFFKSMTTDYNIVPKVEHCACIVALYCKS 465
           ++ G  FFK M T +++ P+VEHCACIV L CKS
Sbjct: 434 VDQGMSFFKEMKTIHHVSPQVEHCACIVDLLCKS 467



 Score =  103 bits (257), Expect = 1e-20
 Identities = 50/124 (40%), Positives = 79/124 (63%)
 Frame = +1

Query: 4   KPNDVTFVSVVSACSQLGSVEAAEHIGNYIESLGFVSNVYVASALLDMYSKCGNVRKARQ 183
           +PN +T  ++ S C++ G +E  +   + I     + N+ V +AL++MY KC  + +AR+
Sbjct: 214 RPNAITIATMFSICAKTGDLETGKWARSLIAEQD-LQNMIVHTALMEMYVKCRAIDEARR 272

Query: 184 LFDQMNHRDVVSWNSMIGGLAVNGFAREAIDLFMEMKVSEVKPNDITFVGLLTACTHAGL 363
            FD+M  RDVV+W++MI G A NG   E+++LF  MK +  KPN++T VG+L+AC   G 
Sbjct: 273 EFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGVLSACAQLGS 332

Query: 364 IELG 375
            ELG
Sbjct: 333 DELG 336



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 40/111 (36%), Positives = 60/111 (54%)
 Frame = +1

Query: 130 SALLDMYSKCGNVRKARQLFDQMNHRDVVSWNSMIGGLAVNGFAREAIDLFMEMKVSEVK 309
           + L+  YSK G+V KAR+LFD M  R   SWNSMI   A  G  +EA+ LF  M     +
Sbjct: 155 NCLITGYSKSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEGAR 214

Query: 310 PNDITFVGLLTACTHAGLIELGCGFFKSMTTDYNIVPKVEHCACIVALYCK 462
           PN IT   + + C   G +E G  + +S+  + ++   + H A ++ +Y K
Sbjct: 215 PNAITIATMFSICAKTGDLETG-KWARSLIAEQDLQNMIVHTA-LMEMYVK 263


>ref|XP_002458407.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
           gi|241930382|gb|EES03527.1| hypothetical protein
           SORBIDRAFT_03g032890 [Sorghum bicolor]
          Length = 695

 Score =  186 bits (471), Expect = 2e-45
 Identities = 88/154 (57%), Positives = 115/154 (74%)
 Frame = +1

Query: 4   KPNDVTFVSVVSACSQLGSVEAAEHIGNYIESLGFVSNVYVASALLDMYSKCGNVRKARQ 183
           KPN+VT V V+SAC+QLGS E  E IGNYIES       Y+ SAL+DMY+KCG+V +AR 
Sbjct: 403 KPNEVTLVGVLSACAQLGSDELGEQIGNYIESQTLPLTSYLGSALIDMYTKCGHVARARS 462

Query: 184 LFDQMNHRDVVSWNSMIGGLAVNGFAREAIDLFMEMKVSEVKPNDITFVGLLTACTHAGL 363
           +F++M  + VV+WNSMI GLA+NGFA +AI L+ +M    ++PN++TFV LLTACTHAGL
Sbjct: 463 VFNRMEQKVVVTWNSMIRGLALNGFAEDAIALYRKMVGDGIQPNEVTFVALLTACTHAGL 522

Query: 364 IELGCGFFKSMTTDYNIVPKVEHCACIVALYCKS 465
           ++ G  FF+ M    ++ P+VEHCACIV L CKS
Sbjct: 523 VDKGIAFFEEMKKKQHVSPQVEHCACIVDLLCKS 556



 Score =  102 bits (253), Expect = 4e-20
 Identities = 50/123 (40%), Positives = 76/123 (61%)
 Frame = +1

Query: 7   PNDVTFVSVVSACSQLGSVEAAEHIGNYIESLGFVSNVYVASALLDMYSKCGNVRKARQL 186
           PN +T  +V S C++ G ++       +I     + NV V +AL++MY KC  + +AR  
Sbjct: 304 PNAITITTVFSICAKTGDLDTGRRARAWIREED-LQNVIVHTALMEMYVKCRAIDEARHE 362

Query: 187 FDQMNHRDVVSWNSMIGGLAVNGFAREAIDLFMEMKVSEVKPNDITFVGLLTACTHAGLI 366
           FD+M  RDVV+W++MI G + NG   E+++LF  MK +  KPN++T VG+L+AC   G  
Sbjct: 363 FDRMPRRDVVAWSTMIAGYSQNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSD 422

Query: 367 ELG 375
           ELG
Sbjct: 423 ELG 425



 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 34/82 (41%), Positives = 45/82 (54%)
 Frame = +1

Query: 130 SALLDMYSKCGNVRKARQLFDQMNHRDVVSWNSMIGGLAVNGFAREAIDLFMEMKVSEVK 309
           + L+  YSK G+V +AR+LFD M  R   SWNSMI   A  G  REA+ LF +M      
Sbjct: 244 NCLITGYSKSGDVEEARRLFDSMPRRTSASWNSMIACYAHGGEFREALTLFDQMLREGAS 303

Query: 310 PNDITFVGLLTACTHAGLIELG 375
           PN IT   + + C   G ++ G
Sbjct: 304 PNAITITTVFSICAKTGDLDTG 325