BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00035927
         (278 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI26264.3| unnamed protein product [Vitis vinifera]              125   4e-27
ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containi...   125   4e-27
ref|XP_002517126.1| pentatricopeptide repeat-containing protein,...   122   2e-26
ref|XP_003536531.1| PREDICTED: pentatricopeptide repeat-containi...   116   2e-24
ref|XP_004168898.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   114   6e-24

>emb|CBI26264.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  125 bits (314), Expect = 4e-27
 Identities = 63/92 (68%), Positives = 76/92 (82%)
 Frame = +3

Query: 3   NALGSLIESAVLSQSRIRGKASHAKIIKTLGSPLPCFLSNHLVNMYSKFDLLKSAELVLS 182
           N+L SL+ESAV +Q    G+A+HA+IIKTL +PLP F+ NHLVNMYSK D   SA+L+LS
Sbjct: 7   NSLASLVESAVSTQCSRLGRAAHAQIIKTLDNPLPSFIYNHLVNMYSKLDRPNSAQLLLS 66

Query: 183 LSPDRSVVTWTALISGSVQNGHFTSALGHFCN 278
           L+P+RSVVTWTALI+GSVQNG FTSAL HF N
Sbjct: 67  LTPNRSVVTWTALIAGSVQNGRFTSALFHFSN 98


>ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  125 bits (314), Expect = 4e-27
 Identities = 63/92 (68%), Positives = 76/92 (82%)
 Frame = +3

Query: 3   NALGSLIESAVLSQSRIRGKASHAKIIKTLGSPLPCFLSNHLVNMYSKFDLLKSAELVLS 182
           N+L SL+ESAV +Q    G+A+HA+IIKTL +PLP F+ NHLVNMYSK D   SA+L+LS
Sbjct: 7   NSLASLVESAVSTQCSRLGRAAHAQIIKTLDNPLPSFIYNHLVNMYSKLDRPNSAQLLLS 66

Query: 183 LSPDRSVVTWTALISGSVQNGHFTSALGHFCN 278
           L+P+RSVVTWTALI+GSVQNG FTSAL HF N
Sbjct: 67  LTPNRSVVTWTALIAGSVQNGRFTSALFHFSN 98


>ref|XP_002517126.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223543761|gb|EEF45289.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 463

 Score =  122 bits (307), Expect = 2e-26
 Identities = 60/92 (65%), Positives = 75/92 (81%)
 Frame = +3

Query: 3   NALGSLIESAVLSQSRIRGKASHAKIIKTLGSPLPCFLSNHLVNMYSKFDLLKSAELVLS 182
           N+L  ++ESA+ ++S   G+A+HA+IIKT  SPLP FLSNHL++MYSK DL  SA+LVL 
Sbjct: 7   NSLAPILESAISTRSSFLGRATHARIIKTFQSPLPPFLSNHLISMYSKLDLPNSAQLVLH 66

Query: 183 LSPDRSVVTWTALISGSVQNGHFTSALGHFCN 278
           L+P RSVVTWT+LISGSVQNGHF+ AL HF N
Sbjct: 67  LTPTRSVVTWTSLISGSVQNGHFSFALYHFFN 98


>ref|XP_003536531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Glycine max]
          Length = 686

 Score =  116 bits (290), Expect = 2e-24
 Identities = 60/92 (65%), Positives = 71/92 (77%)
 Frame = +3

Query: 3   NALGSLIESAVLSQSRIRGKASHAKIIKTLGSPLPCFLSNHLVNMYSKFDLLKSAELVLS 182
           N LGS +ESAVLS+S + G+A HA I++T  +PLP FL NHLVNMYSK DL  SA+LVLS
Sbjct: 8   NLLGSFLESAVLSRSSLLGRAVHAHILRTHDTPLPSFLCNHLVNMYSKLDLPNSAQLVLS 67

Query: 183 LSPDRSVVTWTALISGSVQNGHFTSALGHFCN 278
           L+  R+VVTWT+LISG V N  FTSAL HF N
Sbjct: 68  LTNPRTVVTWTSLISGCVHNRRFTSALLHFSN 99


>ref|XP_004168898.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14850-like [Cucumis sativus]
          Length = 606

 Score =  114 bits (286), Expect = 6e-24
 Identities = 57/90 (63%), Positives = 72/90 (80%)
 Frame = +3

Query: 3   NALGSLIESAVLSQSRIRGKASHAKIIKTLGSPLPCFLSNHLVNMYSKFDLLKSAELVLS 182
           N+L S++E AV  +S + G+A+HA+I+KTL +P P FL NHLVNMY+K D L SA+L+L 
Sbjct: 7   NSLASVVELAVSVRSSLLGRAAHAQILKTLKTPFPAFLYNHLVNMYAKLDHLNSAKLILE 66

Query: 183 LSPDRSVVTWTALISGSVQNGHFTSALGHF 272
           L+P RSVVTWTALI+GSVQNG F SAL HF
Sbjct: 67  LAPCRSVVTWTALIAGSVQNGCFVSALLHF 96