BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00035874
         (515 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275213.2| PREDICTED: pentatricopeptide repeat-containi...   280   1e-73
ref|XP_002519998.1| pentatricopeptide repeat-containing protein,...   268   4e-70
emb|CBI26569.3| unnamed protein product [Vitis vinifera]              258   5e-67
dbj|BAM64814.1| bvCRP-1 [Beta vulgaris]                               255   2e-66
ref|XP_003516740.1| PREDICTED: pentatricopeptide repeat-containi...   253   1e-65

>ref|XP_002275213.2| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Vitis vinifera]
          Length = 494

 Score =  280 bits (715), Expect = 1e-73
 Identities = 135/169 (79%), Positives = 152/169 (89%)
 Frame = +2

Query: 2   WGLIKENFESMKFRGLKSSGIIFAVLVDIYGQYGRFQNAEECLLALKSEGVQTSAGLYCT 181
           W +IK NFE+MK RG + SG I+A+LVDIYGQYGRFQ  EEC+ ALKSEG+Q SA ++C 
Sbjct: 284 WDVIKRNFENMKCRGHQRSGAIYAILVDIYGQYGRFQGPEECISALKSEGIQPSASMFCV 343

Query: 182 LANAYAQQGLCEQTVKVLQLMEAEGIEPNLIMLNLLINAFSIAGRHLEALSVFHHIKDNG 361
           LANAYAQQGLCEQTVKVLQLME EGIEPNLIMLN+LINAF IAGRHLEALSV+HHIKD G
Sbjct: 344 LANAYAQQGLCEQTVKVLQLMETEGIEPNLIMLNMLINAFGIAGRHLEALSVYHHIKDTG 403

Query: 362 ISPDVVTYSTVMKACIRARQFDQVIKIYKEMESVGCTPDRKAREMLQSA 508
           ISPDVVTYST+MKACIRAR+FD+V +IY+EMES GCTPDRKAREMLQ+A
Sbjct: 404 ISPDVVTYSTLMKACIRARKFDKVPEIYEEMESAGCTPDRKAREMLQTA 452



 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 32/147 (21%), Positives = 77/147 (52%)
 Frame = +2

Query: 44  GLKSSGIIFAVLVDIYGQYGRFQNAEECLLALKSEGVQTSAGLYCTLANAYAQQGLCEQT 223
           G+  +   +  LVD YG+ GR  +    +  +  +G    + +Y  +   Y   G+ ++ 
Sbjct: 123 GIGRNRATYEALVDYYGRAGRLNDVWAVIGEMSRDGFGPDSFVYSKVIGVYRDNGMWKKA 182

Query: 224 VKVLQLMEAEGIEPNLIMLNLLINAFSIAGRHLEALSVFHHIKDNGISPDVVTYSTVMKA 403
           +++++ +   G+  +  + N +I+ F   G   EAL VF  +++ G+ PD++T++++++ 
Sbjct: 183 MEIVREIREMGVSLDKRIYNSIIDTFGKCGELSEALEVFEKMQEEGVKPDIMTWNSLIQW 242

Query: 404 CIRARQFDQVIKIYKEMESVGCTPDRK 484
             +A    + ++++ +M+  G  PD K
Sbjct: 243 HCKAGDVGKALELFSKMQEEGLYPDPK 269


>ref|XP_002519998.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223540762|gb|EEF42322.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 498

 Score =  268 bits (684), Expect = 4e-70
 Identities = 129/171 (75%), Positives = 152/171 (88%)
 Frame = +2

Query: 2   WGLIKENFESMKFRGLKSSGIIFAVLVDIYGQYGRFQNAEECLLALKSEGVQTSAGLYCT 181
           W +I+ENF+ MK  G K SG I+A+LVDIYGQYGRFQ+AEEC+ ALKSEG+  SA ++C 
Sbjct: 282 WNIIRENFDIMKSWGYKKSGAIYAILVDIYGQYGRFQDAEECISALKSEGILPSASMFCV 341

Query: 182 LANAYAQQGLCEQTVKVLQLMEAEGIEPNLIMLNLLINAFSIAGRHLEALSVFHHIKDNG 361
           LANAYAQQGLCEQTVKVLQLMEAEGIEPNLIMLN+LINAF IAGRH EALS++HH+K++G
Sbjct: 342 LANAYAQQGLCEQTVKVLQLMEAEGIEPNLIMLNVLINAFGIAGRHREALSIYHHMKESG 401

Query: 362 ISPDVVTYSTVMKACIRARQFDQVIKIYKEMESVGCTPDRKAREMLQSASM 514
           ISPDVVTYST+MKA IRAR+FD+V +IY EMES GCTPD+KARE+LQ+A M
Sbjct: 402 ISPDVVTYSTLMKAYIRARKFDEVPEIYSEMESSGCTPDKKAREILQAALM 452



 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 33/147 (22%), Positives = 79/147 (53%)
 Frame = +2

Query: 44  GLKSSGIIFAVLVDIYGQYGRFQNAEECLLALKSEGVQTSAGLYCTLANAYAQQGLCEQT 223
           GL  +   + +L+D     GR ++    +  +K +G Q ++ +Y  +   Y   G+ ++ 
Sbjct: 121 GLHRNQETYEILLDYNVNAGRLEDTWSVINEMKQKGFQLNSFVYSKVIGLYRDNGMWKKA 180

Query: 224 VKVLQLMEAEGIEPNLIMLNLLINAFSIAGRHLEALSVFHHIKDNGISPDVVTYSTVMKA 403
           + +++ +   G+  +  + N +I+ F   G   EAL V  +++  GI+PD+VT++++++ 
Sbjct: 181 IGIIEEIREMGMPLDKHIYNSIIDTFGKYGELDEALEVLSNMQQQGITPDIVTWNSLIRW 240

Query: 404 CIRARQFDQVIKIYKEMESVGCTPDRK 484
             +A    + ++++ +M++ G  PD K
Sbjct: 241 HCKAGNLSKALELFSKMQAQGLYPDPK 267


>emb|CBI26569.3| unnamed protein product [Vitis vinifera]
          Length = 392

 Score =  258 bits (658), Expect = 5e-67
 Identities = 125/155 (80%), Positives = 139/155 (89%)
 Frame = +2

Query: 44  GLKSSGIIFAVLVDIYGQYGRFQNAEECLLALKSEGVQTSAGLYCTLANAYAQQGLCEQT 223
           G    G I+A+LVDIYGQYGRFQ  EEC+ ALKSEG+Q SA ++C LANAYAQQGLCEQT
Sbjct: 219 GKALDGAIYAILVDIYGQYGRFQGPEECISALKSEGIQPSASMFCVLANAYAQQGLCEQT 278

Query: 224 VKVLQLMEAEGIEPNLIMLNLLINAFSIAGRHLEALSVFHHIKDNGISPDVVTYSTVMKA 403
           VKVLQLME EGIEPNLIMLN+LINAF IAGRHLEALSV+HHIKD GISPDVVTYST+MKA
Sbjct: 279 VKVLQLMETEGIEPNLIMLNMLINAFGIAGRHLEALSVYHHIKDTGISPDVVTYSTLMKA 338

Query: 404 CIRARQFDQVIKIYKEMESVGCTPDRKAREMLQSA 508
           CIRAR+FD+V +IY+EMES GCTPDRKAREMLQ+A
Sbjct: 339 CIRARKFDKVPEIYEEMESAGCTPDRKAREMLQTA 373


>dbj|BAM64814.1| bvCRP-1 [Beta vulgaris]
          Length = 517

 Score =  255 bits (652), Expect = 2e-66
 Identities = 120/171 (70%), Positives = 149/171 (87%)
 Frame = +2

Query: 2   WGLIKENFESMKFRGLKSSGIIFAVLVDIYGQYGRFQNAEECLLALKSEGVQTSAGLYCT 181
           W L++ENFE MK+RG K SG ++AVLVDIYGQYG+FQ AE+C+ AL++EGVQ S+ +Y  
Sbjct: 342 WDLLRENFEKMKYRGHKKSGAVYAVLVDIYGQYGKFQGAEDCISALRAEGVQMSSNIYSV 401

Query: 182 LANAYAQQGLCEQTVKVLQLMEAEGIEPNLIMLNLLINAFSIAGRHLEALSVFHHIKDNG 361
           +ANAYAQQGLCE+TVKVLQ+MEAEGIEPNLIMLN+LINAF IAGRHLEALS++ HI +NG
Sbjct: 402 MANAYAQQGLCEETVKVLQVMEAEGIEPNLIMLNILINAFGIAGRHLEALSIYDHIIENG 461

Query: 362 ISPDVVTYSTVMKACIRARQFDQVIKIYKEMESVGCTPDRKAREMLQSASM 514
           I+PD+VTY+T+MKA IRA++F +V ++Y+ ME  GCTPDRKAREMLQ A M
Sbjct: 462 INPDIVTYTTLMKALIRAKKFTKVPELYQHMELAGCTPDRKAREMLQIALM 512



 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 34/145 (23%), Positives = 76/145 (52%)
 Frame = +2

Query: 32  MKFRGLKSSGIIFAVLVDIYGQYGRFQNAEECLLALKSEGVQTSAGLYCTLANAYAQQGL 211
           MK +G + +   ++ ++++Y   G ++ A E +  +   GV     +Y ++ + + + G 
Sbjct: 212 MKRKGYQLNSFAYSRVIELYRDNGMWKKAMEIVGEISEMGVPMDRRIYNSIIDTFGKYGE 271

Query: 212 CEQTVKVLQLMEAEGIEPNLIMLNLLINAFSIAGRHLEALSVFHHIKDNGISPDVVTYST 391
            ++ +KVL  M  E I P+++  N LI     AG H++AL +F  ++D G+ PD   +  
Sbjct: 272 LDEALKVLVKMRREEIVPDIMTWNSLIKWHCKAGDHMKALDLFTEMQDQGLYPDPKIFII 331

Query: 392 VMKACIRARQFDQVIKIYKEMESVG 466
           ++       ++D + + +++M+  G
Sbjct: 332 LISQLGNLGKWDLLRENFEKMKYRG 356


>ref|XP_003516740.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Glycine max]
          Length = 554

 Score =  253 bits (645), Expect = 1e-65
 Identities = 120/171 (70%), Positives = 147/171 (85%)
 Frame = +2

Query: 2   WGLIKENFESMKFRGLKSSGIIFAVLVDIYGQYGRFQNAEECLLALKSEGVQTSAGLYCT 181
           WG+IK+ FESMK RG K  G ++AVLVDIYGQYG+FQNA EC+ ALKSEGV  S  ++C 
Sbjct: 342 WGIIKKYFESMKIRGNKEYGAVYAVLVDIYGQYGKFQNARECVQALKSEGVLVSPSIFCV 401

Query: 182 LANAYAQQGLCEQTVKVLQLMEAEGIEPNLIMLNLLINAFSIAGRHLEALSVFHHIKDNG 361
           LANAYAQQGLCEQ + VLQ+MEAEGIEPN++MLN+LINAF  AGR++EA+SV+HHIK++G
Sbjct: 402 LANAYAQQGLCEQVIMVLQIMEAEGIEPNIVMLNMLINAFGNAGRYMEAMSVYHHIKESG 461

Query: 362 ISPDVVTYSTVMKACIRARQFDQVIKIYKEMESVGCTPDRKAREMLQSASM 514
           +SPDVVTY+T+MKA IRA++FD+V  IYKEME+  CTPDRKAR+MLQ A M
Sbjct: 462 VSPDVVTYTTLMKAFIRAKKFDEVPIIYKEMENDRCTPDRKARQMLQVALM 512



 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 37/160 (23%), Positives = 80/160 (50%)
 Frame = +2

Query: 5   GLIKENFESMKFRGLKSSGIIFAVLVDIYGQYGRFQNAEECLLALKSEGVQTSAGLYCTL 184
           GL     + M + G+  S   + + +D Y   GR ++    +  +K +G   ++ +Y  +
Sbjct: 168 GLANGVLKEMDYSGIWRSKETYQIFLDYYVGAGRLEDTWSTINVMKQKGFPLNSFVYSKV 227

Query: 185 ANAYAQQGLCEQTVKVLQLMEAEGIEPNLIMLNLLINAFSIAGRHLEALSVFHHIKDNGI 364
              Y   G+ ++ ++VL+ +   GI  +  + N +I+ F   G   EAL +F  ++  G+
Sbjct: 228 VGIYRDNGMWKKAIEVLEEIRERGISLDTHICNSIIDTFGKYGELDEALKLFKKMQKEGV 287

Query: 365 SPDVVTYSTVMKACIRARQFDQVIKIYKEMESVGCTPDRK 484
            P++VT+++++K   +   F +   ++ +M+  G  PD K
Sbjct: 288 RPNIVTWNSLIKWHCKEGDFMKSFHLFTDMQEQGLYPDPK 327



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 30/145 (20%), Positives = 73/145 (50%)
 Frame = +2

Query: 32  MKFRGLKSSGIIFAVLVDIYGQYGRFQNAEECLLALKSEGVQTSAGLYCTLANAYAQQGL 211
           MK +G   +  +++ +V IY   G ++ A E L  ++  G+     +  ++ + + + G 
Sbjct: 212 MKQKGFPLNSFVYSKVVGIYRDNGMWKKAIEVLEEIRERGISLDTHICNSIIDTFGKYGE 271

Query: 212 CEQTVKVLQLMEAEGIEPNLIMLNLLINAFSIAGRHLEALSVFHHIKDNGISPDVVTYST 391
            ++ +K+ + M+ EG+ PN++  N LI      G  +++  +F  +++ G+ PD   + T
Sbjct: 272 LDEALKLFKKMQKEGVRPNIVTWNSLIKWHCKEGDFMKSFHLFTDMQEQGLYPDPKIFVT 331

Query: 392 VMKACIRARQFDQVIKIYKEMESVG 466
           ++       ++  + K ++ M+  G
Sbjct: 332 IISCMGEQGKWGIIKKYFESMKIRG 356