BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00035811
         (462 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containi...   113   1e-23
emb|CBI29222.3| unnamed protein product [Vitis vinifera]              113   1e-23
ref|XP_002303480.1| predicted protein [Populus trichocarpa] gi|2...   103   2e-20
ref|XP_004149000.1| PREDICTED: pentatricopeptide repeat-containi...    87   2e-15
ref|XP_002867936.1| hypothetical protein ARALYDRAFT_492917 [Arab...    86   4e-15

>ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic [Vitis vinifera]
          Length = 1022

 Score =  113 bits (283), Expect = 1e-23
 Identities = 60/135 (44%), Positives = 91/135 (67%)
 Frame = +2

Query: 56  NNHNHQNKLISILSKPVFNHTQCKETLFKLTPSQFDSLFLDIFNHSNHINPKTTLNLFSF 235
           ++H     + SILS P  + TQCK+ +  L+P QFDS+F   F+   ++NPKT LN F F
Sbjct: 112 SDHALLKSVTSILSNPSLDSTQCKQLIPHLSPHQFDSVF---FSVRRNVNPKTALNFFYF 168

Query: 236 ASNTLNYKFSVKSYCLLIRFLIGSNLVSPARLVLIRVIDDRGLVIFYNSLENRHLEIVNA 415
           AS++  ++F+++SYC+L+R LI S  VSPARL+LIR+I DR L + +   +NRH+EI +A
Sbjct: 169 ASDSCGFRFTLRSYCVLMRSLIVSGFVSPARLLLIRLI-DRKLPVLFGDPKNRHIEIASA 227

Query: 416 VAEIGGGRDGGVGNA 460
           +A++    + GV  A
Sbjct: 228 MADLNEVGESGVAVA 242


>emb|CBI29222.3| unnamed protein product [Vitis vinifera]
          Length = 826

 Score =  113 bits (283), Expect = 1e-23
 Identities = 60/135 (44%), Positives = 91/135 (67%)
 Frame = +2

Query: 56  NNHNHQNKLISILSKPVFNHTQCKETLFKLTPSQFDSLFLDIFNHSNHINPKTTLNLFSF 235
           ++H     + SILS P  + TQCK+ +  L+P QFDS+F   F+   ++NPKT LN F F
Sbjct: 45  SDHALLKSVTSILSNPSLDSTQCKQLIPHLSPHQFDSVF---FSVRRNVNPKTALNFFYF 101

Query: 236 ASNTLNYKFSVKSYCLLIRFLIGSNLVSPARLVLIRVIDDRGLVIFYNSLENRHLEIVNA 415
           AS++  ++F+++SYC+L+R LI S  VSPARL+LIR+I DR L + +   +NRH+EI +A
Sbjct: 102 ASDSCGFRFTLRSYCVLMRSLIVSGFVSPARLLLIRLI-DRKLPVLFGDPKNRHIEIASA 160

Query: 416 VAEIGGGRDGGVGNA 460
           +A++    + GV  A
Sbjct: 161 MADLNEVGESGVAVA 175


>ref|XP_002303480.1| predicted protein [Populus trichocarpa] gi|222840912|gb|EEE78459.1|
           predicted protein [Populus trichocarpa]
          Length = 836

 Score =  103 bits (256), Expect = 2e-20
 Identities = 50/122 (40%), Positives = 79/122 (64%)
 Frame = +2

Query: 59  NHNHQNKLISILSKPVFNHTQCKETLFKLTPSQFDSLFLDIFNHSNHINPKTTLNLFSFA 238
           N +   ++  ILS P  +  +CKE +  L+P +FDS FL +    +++NPKT LN F F 
Sbjct: 54  NQSLLKRVSLILSNPSLDCAKCKELVPHLSPQEFDSCFLAL---KSNVNPKTALNFFHFV 110

Query: 239 SNTLNYKFSVKSYCLLIRFLIGSNLVSPARLVLIRVIDDRGLVIFYNSLENRHLEIVNAV 418
           S T  ++F+ +SYC+LI  L+G++L+SPARL+LIR+ID +    +  + E+RH EI   +
Sbjct: 111 SETCKFRFTARSYCVLIHLLVGNDLLSPARLLLIRLIDGKVPAFYARNFESRHFEIAQIM 170

Query: 419 AE 424
           A+
Sbjct: 171 AD 172


>ref|XP_004149000.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Cucumis sativus]
          Length = 822

 Score = 86.7 bits (213), Expect = 2e-15
 Identities = 50/111 (45%), Positives = 67/111 (60%)
 Frame = +2

Query: 86  SILSKPVFNHTQCKETLFKLTPSQFDSLFLDIFNHSNHINPKTTLNLFSFASNTLNYKFS 265
           S+LS    + ++C   L  L+PSQFD LF  I       NP T LN F FASN+  ++F+
Sbjct: 52  SVLSHSSLDSSKCSALLPHLSPSQFDQLFFSI---GLKANPMTCLNFFYFASNSFKFRFT 108

Query: 266 VKSYCLLIRFLIGSNLVSPARLVLIRVIDDRGLVIFYNSLENRHLEIVNAV 418
           + SYC LI  LI S  + PARL+LIR+ID    V+  +S E  H+EI NA+
Sbjct: 109 IHSYCTLILLLIRSKFIPPARLLLIRLIDGNLPVLNLDS-EKFHIEIANAL 158


>ref|XP_002867936.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
           lyrata] gi|297313772|gb|EFH44195.1| hypothetical protein
           ARALYDRAFT_492917 [Arabidopsis lyrata subsp. lyrata]
          Length = 817

 Score = 85.5 bits (210), Expect = 4e-15
 Identities = 49/126 (38%), Positives = 79/126 (62%), Gaps = 2/126 (1%)
 Frame = +2

Query: 56  NNHNHQNKLISILSKPVFNHTQCKETLFKLTPSQFDSLFLDIFNHSNHINPKTTLNLFSF 235
           + H H+ +L S+LSK   ++ QCK+ +  L+P +FD LF +       +NPKT L+ F  
Sbjct: 49  DRHLHE-RLSSVLSKRSLDYEQCKQLITVLSPHEFDRLFPEF---RFKVNPKTALDFFRL 104

Query: 236 ASNTLNYKFSVKSYCLLIRFLIGSNLVSPARLVLIRVIDDRGLVI--FYNSLENRHLEIV 409
           AS++ ++ FS++SYCLLI  L+ +NL SPAR+VLIR+I+    V+      L +  + I 
Sbjct: 105 ASDSFSFSFSLRSYCLLIGLLLDANLSSPARVVLIRLINGNVPVLPCGNGGLRDSRVAIA 164

Query: 410 NAVAEI 427
           +A+A +
Sbjct: 165 DAMASL 170