BLASTX nr result
ID: Coptis24_contig00035797
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00035797
(226 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003634341.1| PREDICTED: pentatricopeptide repeat-containi... 116 2e-24
emb|CBI40755.3| unnamed protein product [Vitis vinifera] 116 2e-24
ref|XP_003549481.1| PREDICTED: pentatricopeptide repeat-containi... 106 2e-21
ref|XP_003549322.1| PREDICTED: pentatricopeptide repeat-containi... 106 2e-21
ref|XP_003534689.1| PREDICTED: pentatricopeptide repeat-containi... 103 1e-20
>ref|XP_003634341.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Vitis vinifera]
Length = 767
Score = 116 bits (290), Expect = 2e-24
Identities = 51/75 (68%), Positives = 62/75 (82%)
Frame = +1
Query: 1 LTMYAKCGKIKTAHHVFQLMPAKDIISWTAMLTAFSQIGDLENARQCFNSMPGRNVITWN 180
+TMYAKCG + A+H F+LMP +DIISWTAM+TAFSQ GD+E AR+ F+ MP RNVI+WN
Sbjct: 402 VTMYAKCGDVWKANHAFELMPIRDIISWTAMITAFSQAGDVEKAREYFDKMPERNVISWN 461
Query: 181 SMLAAYTQHGHWEEG 225
SMLA Y Q G+WEEG
Sbjct: 462 SMLATYMQRGYWEEG 476
Score = 62.4 bits (150), Expect = 4e-08
Identities = 26/73 (35%), Positives = 42/73 (57%)
Frame = +1
Query: 1 LTMYAKCGKIKTAHHVFQLMPAKDIISWTAMLTAFSQIGDLENARQCFNSMPGRNVITWN 180
L MY+ CG I A+ VF + ++ SW M++ F+ G + A + F MP R+ ++WN
Sbjct: 36 LNMYSNCGLISDAYRVFGGIMFPNVYSWNTMISGFADSGQMREAEKLFEKMPERDSVSWN 95
Query: 181 SMLAAYTQHGHWE 219
SM++ Y +G E
Sbjct: 96 SMMSGYFHNGELE 108
Score = 61.2 bits (147), Expect = 8e-08
Identities = 26/74 (35%), Positives = 42/74 (56%)
Frame = +1
Query: 1 LTMYAKCGKIKTAHHVFQLMPAKDIISWTAMLTAFSQIGDLENARQCFNSMPGRNVITWN 180
L MY KCG + A VF P + W +M+ +S+ G ++ A + F MP R+ ++WN
Sbjct: 169 LDMYIKCGAMDFAQKVFCRTPNPSLFCWNSMIYGYSKYGSVKKALELFAKMPERDTVSWN 228
Query: 181 SMLAAYTQHGHWEE 222
+M++ +QHG E
Sbjct: 229 TMISILSQHGFGAE 242
>emb|CBI40755.3| unnamed protein product [Vitis vinifera]
Length = 789
Score = 116 bits (290), Expect = 2e-24
Identities = 51/75 (68%), Positives = 62/75 (82%)
Frame = +1
Query: 1 LTMYAKCGKIKTAHHVFQLMPAKDIISWTAMLTAFSQIGDLENARQCFNSMPGRNVITWN 180
+TMYAKCG + A+H F+LMP +DIISWTAM+TAFSQ GD+E AR+ F+ MP RNVI+WN
Sbjct: 389 VTMYAKCGDVWKANHAFELMPIRDIISWTAMITAFSQAGDVEKAREYFDKMPERNVISWN 448
Query: 181 SMLAAYTQHGHWEEG 225
SMLA Y Q G+WEEG
Sbjct: 449 SMLATYMQRGYWEEG 463
Score = 62.4 bits (150), Expect = 4e-08
Identities = 26/73 (35%), Positives = 42/73 (57%)
Frame = +1
Query: 1 LTMYAKCGKIKTAHHVFQLMPAKDIISWTAMLTAFSQIGDLENARQCFNSMPGRNVITWN 180
L MY+ CG I A+ VF + ++ SW M++ F+ G + A + F MP R+ ++WN
Sbjct: 46 LNMYSNCGLISDAYRVFGGIMFPNVYSWNTMISGFADSGQMREAEKLFEKMPERDSVSWN 105
Query: 181 SMLAAYTQHGHWE 219
SM++ Y +G E
Sbjct: 106 SMMSGYFHNGELE 118
Score = 61.2 bits (147), Expect = 8e-08
Identities = 26/74 (35%), Positives = 42/74 (56%)
Frame = +1
Query: 1 LTMYAKCGKIKTAHHVFQLMPAKDIISWTAMLTAFSQIGDLENARQCFNSMPGRNVITWN 180
L MY KCG + A VF P + W +M+ +S+ G ++ A + F MP R+ ++WN
Sbjct: 156 LDMYIKCGAMDFAQKVFCRTPNPSLFCWNSMIYGYSKYGSVKKALELFAKMPERDTVSWN 215
Query: 181 SMLAAYTQHGHWEE 222
+M++ +QHG E
Sbjct: 216 TMISILSQHGFGAE 229
>ref|XP_003549481.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Glycine max]
Length = 836
Score = 106 bits (264), Expect = 2e-21
Identities = 48/75 (64%), Positives = 58/75 (77%)
Frame = +1
Query: 1 LTMYAKCGKIKTAHHVFQLMPAKDIISWTAMLTAFSQIGDLENARQCFNSMPGRNVITWN 180
+TMYA+CG + A F+ MP +D ISWTAM+TAFSQ GD++ ARQCF+ MP RNVITWN
Sbjct: 417 ITMYARCGDTEKASLAFRSMPLRDTISWTAMITAFSQNGDIDRARQCFDMMPERNVITWN 476
Query: 181 SMLAAYTQHGHWEEG 225
SML+ Y QHG EEG
Sbjct: 477 SMLSTYIQHGFSEEG 491
Score = 55.8 bits (133), Expect = 4e-06
Identities = 23/69 (33%), Positives = 40/69 (57%)
Frame = +1
Query: 7 MYAKCGKIKTAHHVFQLMPAKDIISWTAMLTAFSQIGDLENARQCFNSMPGRNVITWNSM 186
MY KCG I A VF + + + W +M+ +SQ+ A F MP R+ ++WN++
Sbjct: 186 MYIKCGAITLAETVFLNIESPSLFCWNSMIYGYSQLYGPYEALHVFTRMPERDHVSWNTL 245
Query: 187 LAAYTQHGH 213
++ ++Q+GH
Sbjct: 246 ISVFSQYGH 254
>ref|XP_003549322.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Glycine max]
Length = 921
Score = 106 bits (264), Expect = 2e-21
Identities = 48/75 (64%), Positives = 58/75 (77%)
Frame = +1
Query: 1 LTMYAKCGKIKTAHHVFQLMPAKDIISWTAMLTAFSQIGDLENARQCFNSMPGRNVITWN 180
+TMYA+CG + A F+ MP +D ISWTAM+TAFSQ GD++ ARQCF+ MP RNVITWN
Sbjct: 417 ITMYARCGDTEKASLAFRSMPLRDTISWTAMITAFSQNGDIDRARQCFDMMPERNVITWN 476
Query: 181 SMLAAYTQHGHWEEG 225
SML+ Y QHG EEG
Sbjct: 477 SMLSTYIQHGFSEEG 491
Score = 55.5 bits (132), Expect = 5e-06
Identities = 22/69 (31%), Positives = 40/69 (57%)
Frame = +1
Query: 7 MYAKCGKIKTAHHVFQLMPAKDIISWTAMLTAFSQIGDLENARQCFNSMPGRNVITWNSM 186
MY KCG I A +F + + + W +M+ +SQ+ A F MP R+ ++WN++
Sbjct: 186 MYIKCGAITLAETIFLNIESPSLFCWNSMIYGYSQLYGPYEALHVFTRMPERDHVSWNTL 245
Query: 187 LAAYTQHGH 213
++ ++Q+GH
Sbjct: 246 ISVFSQYGH 254
>ref|XP_003534689.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Glycine max]
Length = 948
Score = 103 bits (258), Expect = 1e-20
Identities = 47/75 (62%), Positives = 57/75 (76%)
Frame = +1
Query: 1 LTMYAKCGKIKTAHHVFQLMPAKDIISWTAMLTAFSQIGDLENARQCFNSMPGRNVITWN 180
+TMYA+CG + A F+ MP +D ISWTAM+TAFSQ GD++ ARQCF+ P RNVITWN
Sbjct: 417 ITMYARCGDTEKASLAFRSMPLRDTISWTAMITAFSQNGDIDRARQCFDMTPERNVITWN 476
Query: 181 SMLAAYTQHGHWEEG 225
SML+ Y QHG EEG
Sbjct: 477 SMLSTYIQHGFSEEG 491