BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00035750
         (256 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containi...   113   2e-23
ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containi...   109   2e-22
emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]   109   2e-22
ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containi...   108   5e-22
ref|XP_002518758.1| pentatricopeptide repeat-containing protein,...   106   2e-21

>ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  113 bits (282), Expect = 2e-23
 Identities = 53/85 (62%), Positives = 68/85 (80%)
 Frame = -2

Query: 255 LDVFREMCMEGVKMDSMTVSSILPVCAPLNNLDTGMFAHVYVIKNGLEFDVYVSNALINM 76
           LDV  EM +EG+ MDS+TV+SILPVCA L ++ T    H+YVIK+GLEF+++VSNALINM
Sbjct: 258 LDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINM 317

Query: 75  YAKFGMLALARSIFDQMMVRDLVSW 1
           YAKFG L  A+ +F QM +RD+VSW
Sbjct: 318 YAKFGNLGDAQKVFQQMFLRDVVSW 342



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 27/62 (43%), Positives = 40/62 (64%)
 Frame = -2

Query: 186 PVCAPLNNLDTGMFAHVYVIKNGLEFDVYVSNALINMYAKFGMLALARSIFDQMMVRDLV 7
           PV      L  G   H +V K G ++DV+V+ +LI+MY++FG + +ARS+FD M  RD+ 
Sbjct: 180 PVLKACQTLVDGRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMG 239

Query: 6   SW 1
           SW
Sbjct: 240 SW 241


>ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  109 bits (273), Expect = 2e-22
 Identities = 53/85 (62%), Positives = 65/85 (76%)
 Frame = -2

Query: 255 LDVFREMCMEGVKMDSMTVSSILPVCAPLNNLDTGMFAHVYVIKNGLEFDVYVSNALINM 76
           LDV  EM +EG+KM+ +TV SILPVC  L ++ T M  H+YVIK+GLEFD++VSNALINM
Sbjct: 301 LDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINM 360

Query: 75  YAKFGMLALARSIFDQMMVRDLVSW 1
           YAKFG L  AR  F QM + D+VSW
Sbjct: 361 YAKFGNLEDARKAFQQMFITDVVSW 385



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 27/82 (32%), Positives = 48/82 (58%)
 Frame = -2

Query: 246 FREMCMEGVKMDSMTVSSILPVCAPLNNLDTGMFAHVYVIKNGLEFDVYVSNALINMYAK 67
           ++ + +  ++ D  T   +L  C  L +   G   H +  K G +++V+V+ +LI+MY++
Sbjct: 206 YQLLLVSEIRPDFYTFPPVLKACGTLVD---GRKIHCWAFKLGFQWNVFVAASLIHMYSR 262

Query: 66  FGMLALARSIFDQMMVRDLVSW 1
           FG   +ARS+FD M  RD+ SW
Sbjct: 263 FGFTGIARSLFDDMPFRDMGSW 284



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 26/83 (31%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
 Frame = -2

Query: 246 FREMCMEGVKMDSMTVSSILPVCAPLNNLDTGMFAHVYVIKNG-LEFDVYVSNALINMYA 70
           F +M + G + D +T+ S+  + A   +       H ++++ G L  DV + NA+++MYA
Sbjct: 405 FVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYA 464

Query: 69  KFGMLALARSIFDQMMVRDLVSW 1
           K G+L  A  +F+ + V+D++SW
Sbjct: 465 KLGLLDSAHKVFEIIPVKDVISW 487


>emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  109 bits (273), Expect = 2e-22
 Identities = 53/85 (62%), Positives = 65/85 (76%)
 Frame = -2

Query: 255 LDVFREMCMEGVKMDSMTVSSILPVCAPLNNLDTGMFAHVYVIKNGLEFDVYVSNALINM 76
           LDV  EM +EG+KM+ +TV SILPVC  L ++ T M  H+YVIK+GLEFD++VSNALINM
Sbjct: 301 LDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINM 360

Query: 75  YAKFGMLALARSIFDQMMVRDLVSW 1
           YAKFG L  AR  F QM + D+VSW
Sbjct: 361 YAKFGNLEDARKAFQQMFITDVVSW 385



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 27/82 (32%), Positives = 48/82 (58%)
 Frame = -2

Query: 246 FREMCMEGVKMDSMTVSSILPVCAPLNNLDTGMFAHVYVIKNGLEFDVYVSNALINMYAK 67
           ++ + +  ++ D  T   +L  C  L +   G   H +  K G +++V+V+ +LI+MY++
Sbjct: 206 YQLLLVSEIRPDFYTFPPVLKACGTLVD---GRRIHCWAFKLGFQWNVFVAASLIHMYSR 262

Query: 66  FGMLALARSIFDQMMVRDLVSW 1
           FG   +ARS+FD M  RD+ SW
Sbjct: 263 FGFTGIARSLFDDMPFRDMGSW 284



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 26/83 (31%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
 Frame = -2

Query: 246 FREMCMEGVKMDSMTVSSILPVCAPLNNLDTGMFAHVYVIKNG-LEFDVYVSNALINMYA 70
           F +M + G + D +T+ S+  + A   +       H ++++ G L  DV + NA+++MYA
Sbjct: 405 FVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYA 464

Query: 69  KFGMLALARSIFDQMMVRDLVSW 1
           K G+L  A  +F+ ++V+D++SW
Sbjct: 465 KLGLLDSAHKVFEIILVKDVISW 487


>ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
           gi|449476583|ref|XP_004154777.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  108 bits (270), Expect = 5e-22
 Identities = 51/85 (60%), Positives = 67/85 (78%)
 Frame = -2

Query: 255 LDVFREMCMEGVKMDSMTVSSILPVCAPLNNLDTGMFAHVYVIKNGLEFDVYVSNALINM 76
           L+VF EM  + V MDS+T+SS+LP+C  L+++ +G+  HVY IK GLEFD++V NALINM
Sbjct: 225 LEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINM 284

Query: 75  YAKFGMLALARSIFDQMMVRDLVSW 1
           YAKFG L  A +IF+QM VRD+VSW
Sbjct: 285 YAKFGELRSAETIFNQMKVRDIVSW 309



 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 27/62 (43%), Positives = 41/62 (66%)
 Frame = -2

Query: 186 PVCAPLNNLDTGMFAHVYVIKNGLEFDVYVSNALINMYAKFGMLALARSIFDQMMVRDLV 7
           PV     NLD G   H  V+K G E DVY++ + I+ Y++FG ++LA ++FD MM+RD+ 
Sbjct: 147 PVIRACGNLDDGRKVHCLVLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIG 206

Query: 6   SW 1
           +W
Sbjct: 207 TW 208



 Score = 55.8 bits (133), Expect = 4e-06
 Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
 Frame = -2

Query: 255 LDVFREMCMEGVKMDSMTVSSILPVCAPLNNLDTGMFAHVYVIKN-GLEFDVYVSNALIN 79
           L V+ +M   GV  D +T+ S+  V A L N  +    H +V +      D+ + NA+I+
Sbjct: 326 LGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIID 385

Query: 78  MYAKFGMLALARSIFDQMMVRDLVSW 1
           MYAK G +  AR +F+ + V+D++SW
Sbjct: 386 MYAKLGFIDSARKVFEGLPVKDVISW 411



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
 Frame = -2

Query: 255 LDVFREM-CMEGVKMDSMTVSSILPVCAPLNNLDTGMFAHVYVIKNGLEFDVYVSNALIN 79
           +DV+  M    G   +  T  SIL   + L  L  GM AH  +IKN L FD++VS  L++
Sbjct: 428 IDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLIKNFLYFDIFVSTCLVD 487

Query: 78  MYAKFGMLALARSIFDQMMVRDLVSW 1
           MY K G LA A S+F ++  +  VSW
Sbjct: 488 MYGKCGKLADALSLFYEVPHQSSVSW 513


>ref|XP_002518758.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223542139|gb|EEF43683.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 379

 Score =  106 bits (264), Expect = 2e-21
 Identities = 52/85 (61%), Positives = 65/85 (76%)
 Frame = -2

Query: 255 LDVFREMCMEGVKMDSMTVSSILPVCAPLNNLDTGMFAHVYVIKNGLEFDVYVSNALINM 76
           LD+  EM  +GV MD+  V+SILPVCA LN++ +G   H+ VIK GLEFD +VSNALI M
Sbjct: 43  LDIVDEMRKDGVAMDAFAVASILPVCAKLNDVLSGKLIHLLVIKLGLEFDSFVSNALIAM 102

Query: 75  YAKFGMLALARSIFDQMMVRDLVSW 1
           YAKFG L LA+ +FD M+VRD+VSW
Sbjct: 103 YAKFGSLGLAQKVFDHMVVRDIVSW 127



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
 Frame = -2

Query: 246 FREMCMEGVKMDSMTVSSILPVCAPLNNLDTGMFAHVYVIKNGLEF-DVYVSNALINMYA 70
           F +M   GV+ D +TV S+  + A LN+       H +V + G    D  + NA+++MYA
Sbjct: 147 FDKMRQIGVRPDLLTVLSLASIVAQLNDHQNSRSIHGFVTRRGWFMKDTVIGNAVVDMYA 206

Query: 69  KFGMLALARSIFDQMMVRDLVSW 1
           K G    AR++F+++ V+D++SW
Sbjct: 207 KLGATESARAVFERLPVKDVISW 229



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 35/80 (43%), Positives = 43/80 (53%)
 Frame = -2

Query: 240 EMCMEGVKMDSMTVSSILPVCAPLNNLDTGMFAHVYVIKNGLEFDVYVSNALINMYAKFG 61
           E C E V     T  SILP  + L  L  GM  H +VIKN L  DV+V   LI+MY K G
Sbjct: 253 EECKE-VSPTQGTWVSILPAYSHLGALHQGMRTHGHVIKNSLHLDVFVGTCLIDMYGKCG 311

Query: 60  MLALARSIFDQMMVRDLVSW 1
            L  A S+F ++  +D V W
Sbjct: 312 KLDDAMSLFYEVPRKDAVPW 331