BLASTX nr result

ID: Coptis24_contig00035745 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00035745
         (347 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulga...    40   5e-06

>emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1389

 Score = 40.4 bits (93), Expect(2) = 5e-06
 Identities = 20/45 (44%), Positives = 28/45 (62%)
 Frame = -2

Query: 310 KTLSPLQGASLKGRCIGDNIWLASEIFHNMKRFEEKKEKQGWILL 176
           K + PLQGA +  R I DNI +A E+FH+   F+ K  + GWI +
Sbjct: 547 KIIHPLQGAFIPERLIQDNILIAHEVFHS---FKNKTGRGGWIAI 588



 Score = 34.7 bits (78), Expect(2) = 5e-06
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = -1

Query: 182 SVKLDMKKVYDQVEWTFVFKNSVRYSFIPL 93
           ++KLDM+K YD++EW +++    +  F P+
Sbjct: 587 AIKLDMEKAYDRLEWKYIYTTMDKMGFSPI 616


Top