BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00035717
         (275 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282354.1| PREDICTED: splicing factor 3B subunit 3-like...   120   9e-26
ref|XP_002315251.1| predicted protein [Populus trichocarpa] gi|2...   120   1e-25
ref|XP_002312063.1| predicted protein [Populus trichocarpa] gi|2...   120   1e-25
gb|AEY85032.1| spliceosomal-like protein [Camellia sinensis]          118   6e-25
ref|XP_004147708.1| PREDICTED: splicing factor 3B subunit 3-like...   116   2e-24

>ref|XP_002282354.1| PREDICTED: splicing factor 3B subunit 3-like [Vitis vinifera]
          Length = 1214

 Score =  120 bits (302), Expect = 9e-26
 Identities = 62/91 (68%), Positives = 69/91 (75%)
 Frame = -3

Query: 273 APVPEGRQRSRFIAVGSHDNTIRIFSLDPDDCMKIXXXXXXXXXXXXXXXLDVHASVGGE 94
           APVPEGRQRSRF+AVGS+DNTIRI SLDPDDCM+I               L+V ASVGGE
Sbjct: 590 APVPEGRQRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGE 649

Query: 93  DGVYLPAGVFLNVGLQSGVLYRTVVDMVTGQ 1
           DG   PA +FLN GLQ+GVL+RTVVDMVTGQ
Sbjct: 650 DGADHPASLFLNAGLQNGVLFRTVVDMVTGQ 680


>ref|XP_002315251.1| predicted protein [Populus trichocarpa] gi|222864291|gb|EEF01422.1|
           predicted protein [Populus trichocarpa]
          Length = 1213

 Score =  120 bits (300), Expect = 1e-25
 Identities = 60/91 (65%), Positives = 69/91 (75%)
 Frame = -3

Query: 273 APVPEGRQRSRFIAVGSHDNTIRIFSLDPDDCMKIXXXXXXXXXXXXXXXLDVHASVGGE 94
           APVPEGRQRSRF+AVGS+DNTIR+ SLDPDDCM+I               L+V AS+GGE
Sbjct: 590 APVPEGRQRSRFLAVGSYDNTIRVLSLDPDDCMQILSVQSVSAPPESLLFLEVQASIGGE 649

Query: 93  DGVYLPAGVFLNVGLQSGVLYRTVVDMVTGQ 1
           DG   PA +FLN GLQ+GVL+RTVVDMVTGQ
Sbjct: 650 DGADHPASLFLNAGLQTGVLFRTVVDMVTGQ 680


>ref|XP_002312063.1| predicted protein [Populus trichocarpa] gi|222851883|gb|EEE89430.1|
           predicted protein [Populus trichocarpa]
          Length = 1213

 Score =  120 bits (300), Expect = 1e-25
 Identities = 60/91 (65%), Positives = 69/91 (75%)
 Frame = -3

Query: 273 APVPEGRQRSRFIAVGSHDNTIRIFSLDPDDCMKIXXXXXXXXXXXXXXXLDVHASVGGE 94
           APVPEGRQRSRF+AVGS+DNTIR+ SLDPDDCM+I               L+V AS+GGE
Sbjct: 590 APVPEGRQRSRFLAVGSYDNTIRVLSLDPDDCMQILSVQSVSAPPESLLFLEVQASIGGE 649

Query: 93  DGVYLPAGVFLNVGLQSGVLYRTVVDMVTGQ 1
           DG   PA +FLN GLQ+GVL+RTVVDMVTGQ
Sbjct: 650 DGADHPASLFLNAGLQTGVLFRTVVDMVTGQ 680


>gb|AEY85032.1| spliceosomal-like protein [Camellia sinensis]
          Length = 1212

 Score =  118 bits (295), Expect = 6e-25
 Identities = 60/91 (65%), Positives = 68/91 (74%)
 Frame = -3

Query: 273 APVPEGRQRSRFIAVGSHDNTIRIFSLDPDDCMKIXXXXXXXXXXXXXXXLDVHASVGGE 94
           APVPEGRQRSRF+AVGS+DN IRI SLDPDDCM++               L+V ASVGGE
Sbjct: 590 APVPEGRQRSRFLAVGSYDNCIRILSLDPDDCMQVLSLQSVSSPPESLLFLEVQASVGGE 649

Query: 93  DGVYLPAGVFLNVGLQSGVLYRTVVDMVTGQ 1
           DG   PA +FLN GLQ+GVL+RTVVDMVTGQ
Sbjct: 650 DGADHPASLFLNAGLQNGVLFRTVVDMVTGQ 680


>ref|XP_004147708.1| PREDICTED: splicing factor 3B subunit 3-like [Cucumis sativus]
           gi|449513493|ref|XP_004164340.1| PREDICTED: splicing
           factor 3B subunit 3-like [Cucumis sativus]
          Length = 1214

 Score =  116 bits (291), Expect = 2e-24
 Identities = 61/91 (67%), Positives = 67/91 (73%)
 Frame = -3

Query: 273 APVPEGRQRSRFIAVGSHDNTIRIFSLDPDDCMKIXXXXXXXXXXXXXXXLDVHASVGGE 94
           APVPEGRQRSRF+AVGS+DNTIRI SLDPDDCM+I               L+V ASVGGE
Sbjct: 590 APVPEGRQRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSAAPESLLFLEVLASVGGE 649

Query: 93  DGVYLPAGVFLNVGLQSGVLYRTVVDMVTGQ 1
           DG   PA +FLN  L SGVL+RTVVDMVTGQ
Sbjct: 650 DGADHPASLFLNAALHSGVLFRTVVDMVTGQ 680