BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00035680
         (641 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containi...   254   1e-65
ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   227   1e-57
ref|XP_002313097.1| predicted protein [Populus trichocarpa] gi|2...   227   2e-57
ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containi...   226   2e-57
ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata] g...   211   1e-52

>ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 762

 Score =  254 bits (649), Expect = 1e-65
 Identities = 135/214 (63%), Positives = 165/214 (77%), Gaps = 3/214 (1%)
 Frame = -1

Query: 635 SPALLAEQVYKLVKQHQPIPKQLSSHFTPQAASHFLLNSQFNQTLTLKFLNWATPHSFFT 456
           S ALL ++   L+K H      LSS FTPQ+AS+FLL SQF+QTLTLKFL WA  H FF 
Sbjct: 29  SHALLVDKAITLLKFHPHHLDSLSSRFTPQSASYFLLKSQFDQTLTLKFLTWARNHPFFD 88

Query: 455 SHPKCISLHILTNFKLYKSAQSLAQTLISTHDD--DMSIFNCLKLTYHECNSSSAVFDLL 282
           SH KC+SLHILT FKLYK+AQ+LAQ L  +  D    SIF CLK +YH  NSSSAVFDL+
Sbjct: 89  SHCKCLSLHILTRFKLYKTAQTLAQELALSASDPSGSSIFQCLKDSYHVYNSSSAVFDLM 148

Query: 281 IKSYANLGMIKKGLVTIDLAKNSGFGPGVLSYNSLLDAMFKSRGSVQM-VEELYREMIKC 105
           +KSY++L MI + + TI+LAK+SGF PGVLSYNS+LDA+ +SRGSV++  EE+YREMI+ 
Sbjct: 149 VKSYSHLNMIDQAVNTINLAKSSGFMPGVLSYNSVLDAIVRSRGSVKLSAEEVYREMIRS 208

Query: 104 GVSPNVYSFNILIRGFCKQGEMEKGLEFFKEMER 3
            VSPNVY++NILIRGFC  GE++KGL  F EMER
Sbjct: 209 RVSPNVYTYNILIRGFCSVGELQKGLGCFGEMER 242



 Score = 67.0 bits (162), Expect = 3e-09
 Identities = 31/95 (32%), Positives = 58/95 (61%)
 Frame = -1

Query: 293 FDLLIKSYANLGMIKKGLVTIDLAKNSGFGPGVLSYNSLLDAMFKSRGSVQMVEELYREM 114
           +++LI+ + ++G ++KGL      + +G  P V++YN+L+DA  K  G +     L + M
Sbjct: 217 YNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKM-GRIDEAFGLLKSM 275

Query: 113 IKCGVSPNVYSFNILIRGFCKQGEMEKGLEFFKEM 9
              G+ PN+ S+N++I G C++G M++  E  +EM
Sbjct: 276 SSKGMQPNLISYNVIINGLCREGSMKEAWEILEEM 310



 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 28/104 (26%), Positives = 54/104 (51%)
 Frame = -1

Query: 314 CNSSSAVFDLLIKSYANLGMIKKGLVTIDLAKNSGFGPGVLSYNSLLDAMFKSRGSVQMV 135
           C  +   ++ LI +Y  +G I +    +    + G  P ++SYN +++ + +  GS++  
Sbjct: 245 CLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCRE-GSMKEA 303

Query: 134 EELYREMIKCGVSPNVYSFNILIRGFCKQGEMEKGLEFFKEMER 3
            E+  EM   G +P+  ++N L+ G+CK+G   + L    EM R
Sbjct: 304 WEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVR 347



 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 29/101 (28%), Positives = 59/101 (58%), Gaps = 6/101 (5%)
 Frame = -1

Query: 293 FDLLIKSYANLGMIKKGLVTIDLAKNSGFGPGVLSYNS------LLDAMFKSRGSVQMVE 132
           +  LI  ++  G++ +    ++    SGF P V++YN+      +L+ M ++ G VQ   
Sbjct: 392 YTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQ--- 448

Query: 131 ELYREMIKCGVSPNVYSFNILIRGFCKQGEMEKGLEFFKEM 9
               EM++ G++P+V S++ +I GFC++GE+++  +  +EM
Sbjct: 449 ----EMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEM 485


>ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  227 bits (579), Expect = 1e-57
 Identities = 111/211 (52%), Positives = 157/211 (74%), Gaps = 2/211 (0%)
 Frame = -1

Query: 629 ALLAEQVYKLVKQHQPIPKQLSSHFTPQAASHFLLNSQFNQTLTLKFLNWATPHSFFTSH 450
           ALLA++    +++H      LSSHFTPQA+S+ LL SQF+ +L LKFL+WA    FF+  
Sbjct: 21  ALLADKAIVYLRRHPEQLTLLSSHFTPQASSNLLLKSQFDSSLVLKFLDWARSQQFFSFQ 80

Query: 449 PKCISLHILTNFKLYKSAQSLAQTLISTHDDDMS--IFNCLKLTYHECNSSSAVFDLLIK 276
            KC++LHILT +KLYK+AQSLA+ ++    D+    +F CLK +Y++C SSSAVFDL++K
Sbjct: 81  CKCLALHILTRYKLYKTAQSLAEEVVVNTVDETGEDLFQCLKNSYYQCKSSSAVFDLVVK 140

Query: 275 SYANLGMIKKGLVTIDLAKNSGFGPGVLSYNSLLDAMFKSRGSVQMVEELYREMIKCGVS 96
           S A + +I K L  ++LAK+ GF PGVLSYN++LDA+ +++ SV++ E +++EM++ GVS
Sbjct: 141 SCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVS 200

Query: 95  PNVYSFNILIRGFCKQGEMEKGLEFFKEMER 3
           PNVY++NILIRGFC  G +E GL FF EMER
Sbjct: 201 PNVYTYNILIRGFCTAGNLEMGLXFFGEMER 231



 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 30/97 (30%), Positives = 59/97 (60%)
 Frame = -1

Query: 293 FDLLIKSYANLGMIKKGLVTIDLAKNSGFGPGVLSYNSLLDAMFKSRGSVQMVEELYREM 114
           +++LI+ +   G ++ GL      + +G  P V++YN+++DA  K R  +    +L R M
Sbjct: 206 YNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLR-KIGEAFKLLRLM 264

Query: 113 IKCGVSPNVYSFNILIRGFCKQGEMEKGLEFFKEMER 3
              G++PN+ S+N++I G C++G+M++  E  +EM +
Sbjct: 265 ALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSK 301


>ref|XP_002313097.1| predicted protein [Populus trichocarpa] gi|222849505|gb|EEE87052.1|
           predicted protein [Populus trichocarpa]
          Length = 751

 Score =  227 bits (578), Expect = 2e-57
 Identities = 121/217 (55%), Positives = 154/217 (70%), Gaps = 4/217 (1%)
 Frame = -1

Query: 641 LQSP--ALLAEQVYKLVKQHQPIPKQLSSHFTPQAASHFLLNSQFNQTLTLKFLNWATPH 468
           L SP  ALLAE+   L+K++      +SS  TP+ AS+ LL +Q ++TLTLKF+N+A PH
Sbjct: 15  LSSPTDALLAEKALTLLKRYPYHLNSISSQITPELASYLLLQTQNDRTLTLKFINFAKPH 74

Query: 467 SFFTSHPKCISLHILTNFKLYKSAQSLAQTLISTHDDDMS--IFNCLKLTYHECNSSSAV 294
            FF  H KCI+LHILT FKLYK+AQ+LAQ L     D+     F CLK TY  CNSSSAV
Sbjct: 75  QFFNPHCKCIALHILTKFKLYKTAQNLAQDLAENSVDEKGNYFFQCLKDTYFMCNSSSAV 134

Query: 293 FDLLIKSYANLGMIKKGLVTIDLAKNSGFGPGVLSYNSLLDAMFKSRGSVQMVEELYREM 114
           FDL++KS + L  I+K L  +DLAK +GF PGVLSYN++LD++ + R  V   E++YREM
Sbjct: 135 FDLVVKSCSYLNFIEKALNIVDLAKLNGFMPGVLSYNAILDSIVRCRKPVIFAEKVYREM 194

Query: 113 IKCGVSPNVYSFNILIRGFCKQGEMEKGLEFFKEMER 3
           I  GVS NV+S+NILIRGFC  G +E GL FF+EMER
Sbjct: 195 IASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMER 231


>ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  226 bits (577), Expect = 2e-57
 Identities = 111/211 (52%), Positives = 157/211 (74%), Gaps = 2/211 (0%)
 Frame = -1

Query: 629 ALLAEQVYKLVKQHQPIPKQLSSHFTPQAASHFLLNSQFNQTLTLKFLNWATPHSFFTSH 450
           ALLA++    +++H      LSSHFTPQA+S+ LL SQF+ +L LKFL+WA    FF+  
Sbjct: 21  ALLADKAIVYLRRHPEQLTLLSSHFTPQASSNLLLKSQFDSSLVLKFLDWARSQQFFSFQ 80

Query: 449 PKCISLHILTNFKLYKSAQSLAQTLISTHDDDMS--IFNCLKLTYHECNSSSAVFDLLIK 276
            KC++LHILT +KLYK+AQSLA+ ++    D+    +F CLK +Y++C SSSAVFDL++K
Sbjct: 81  CKCLALHILTRYKLYKTAQSLAEEVVVNTVDETGEDLFQCLKNSYYQCKSSSAVFDLVVK 140

Query: 275 SYANLGMIKKGLVTIDLAKNSGFGPGVLSYNSLLDAMFKSRGSVQMVEELYREMIKCGVS 96
           S A + +I K L  ++LAK+ GF PGVLSYN++LDA+ +++ SV++ E +++EM++ GVS
Sbjct: 141 SCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVS 200

Query: 95  PNVYSFNILIRGFCKQGEMEKGLEFFKEMER 3
           PNVY++NILIRGFC  G +E GL FF EMER
Sbjct: 201 PNVYTYNILIRGFCTAGNLEMGLFFFGEMER 231



 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 30/97 (30%), Positives = 59/97 (60%)
 Frame = -1

Query: 293 FDLLIKSYANLGMIKKGLVTIDLAKNSGFGPGVLSYNSLLDAMFKSRGSVQMVEELYREM 114
           +++LI+ +   G ++ GL      + +G  P V++YN+++DA  K R  +    +L R M
Sbjct: 206 YNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCKLR-KIGEAFKLLRLM 264

Query: 113 IKCGVSPNVYSFNILIRGFCKQGEMEKGLEFFKEMER 3
              G++PN+ S+N++I G C++G+M++  E  +EM +
Sbjct: 265 ALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSK 301


>ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
           gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata
           subsp. lyrata]
          Length = 747

 Score =  211 bits (536), Expect = 1e-52
 Identities = 107/214 (50%), Positives = 151/214 (70%), Gaps = 3/214 (1%)
 Frame = -1

Query: 635 SPALLAEQVYKLVKQHQPIPKQLSSHFTPQAASHFLLNSQFNQTLTLKFLNWATPHSFFT 456
           S +LLA++    +K+H      LS++FTP+AAS+ LL SQ NQ L LKFL WA PH FFT
Sbjct: 20  SDSLLADKALTFLKRHPYQLHHLSANFTPEAASNLLLKSQNNQELILKFLTWANPHQFFT 79

Query: 455 SHPKCISLHILTNFKLYKSAQSLAQTLIST--HDDDMS-IFNCLKLTYHECNSSSAVFDL 285
              KCI+LHILT FKLYK+AQ+LA+ + +    D+D S +F  L+ TY  CNS+S+VFDL
Sbjct: 80  LRCKCITLHILTRFKLYKTAQTLAEDVAAKTLDDEDASLVFRSLQETYDLCNSTSSVFDL 139

Query: 284 LIKSYANLGMIKKGLVTIDLAKNSGFGPGVLSYNSLLDAMFKSRGSVQMVEELYREMIKC 105
           ++KSY+ L +I K L  + L++  GF PGVLSYN++LDA  +S+ ++   E +++EM++ 
Sbjct: 140 VVKSYSRLCLIDKALSIVHLSQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLQS 199

Query: 104 GVSPNVYSFNILIRGFCKQGEMEKGLEFFKEMER 3
            VSPNV+++NILIRGFC  G ++  L FF  ME+
Sbjct: 200 QVSPNVFTYNILIRGFCLAGNLDVALRFFDRMEK 233



 Score = 55.8 bits (133), Expect = 7e-06
 Identities = 30/97 (30%), Positives = 52/97 (53%)
 Frame = -1

Query: 293 FDLLIKSYANLGMIKKGLVTIDLAKNSGFGPGVLSYNSLLDAMFKSRGSVQMVEELYREM 114
           +++LI+ +   G +   L   D  +  G  P V++YN+L+D   K R  +    EL R M
Sbjct: 208 YNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLR-KIDDGFELLRSM 266

Query: 113 IKCGVSPNVYSFNILIRGFCKQGEMEKGLEFFKEMER 3
              G+ PN+ S+N++I G C++G M++      EM +
Sbjct: 267 ALKGLEPNLISYNVVINGLCREGRMKEISFVLTEMNK 303