BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00035632
         (434 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI20594.3| unnamed protein product [Vitis vinifera]              219   2e-55
ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cuc...   217   7e-55
ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containi...   216   2e-54
ref|XP_002275535.1| PREDICTED: pentatricopeptide repeat-containi...   200   9e-50
ref|XP_002515531.1| pentatricopeptide repeat-containing protein,...   156   2e-36

>emb|CBI20594.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  219 bits (558), Expect = 2e-55
 Identities = 103/142 (72%), Positives = 119/142 (83%)
 Frame = +3

Query: 3   QNEKYSDAIDLFRQMLRVSGCGPNDVTFVNVLSACAHLGALDLGKWIDRYIRRSGMELNL 182
           QNEKYSDAI++FR M +  G  PNDVT V+VL ACAHLGALDLGKWID +I R  M L L
Sbjct: 172 QNEKYSDAIEVFRMMQQFGGVVPNDVTLVSVLPACAHLGALDLGKWIDGFISRREMALGL 231

Query: 183 FLGNALEDMFAKCGCLKDARRVFNEMHDRDVITWSILISGLAMHGHAGEAFGYFYEMLKC 362
           FLGNAL DM+AKCGC+ +ARRVFN+M +RDVI+WSI+I GLAM+GHA EAFG FYEML C
Sbjct: 232 FLGNALADMYAKCGCITEARRVFNKMEERDVISWSIIICGLAMYGHADEAFGCFYEMLDC 291

Query: 363 GIKPNDITFMGVLSACTHAGLV 428
           G KPND+ FMG+L+ACTHAGLV
Sbjct: 292 GEKPNDVVFMGLLTACTHAGLV 313



 Score = 95.1 bits (235), Expect = 5e-18
 Identities = 56/147 (38%), Positives = 83/147 (56%), Gaps = 4/147 (2%)
 Frame = +3

Query: 3   QNEKYSDAIDLFR-QMLRVSGCGPNDVTFVNVLSACAHLGALDLGKWIDRYIRRSGMELN 179
           QN  +  AI  F  Q+   +   P++ TF +VL ACA L  +  G+ I   + + G E N
Sbjct: 67  QNSHWFHAIQFFNHQVSSPNAPNPDEFTFTSVLKACAGLAHVVNGQKIHAMVTKQGFESN 126

Query: 180 LFLGNALEDMFAKCGCLKDARRVFNEM--HDRDVITWSILISGLAMHGHAGEAFGYFYEM 353
           LF+ N+L DM+ K G L  AR +F+EM   DR+V+ W+ +I+G A +    +A   F  M
Sbjct: 127 LFVRNSLIDMYFKAGYLLLARHLFDEMFVRDRNVVCWNAMIAGYAQNEKYSDAIEVFRMM 186

Query: 354 LKC-GIKPNDITFMGVLSACTHAGLVD 431
            +  G+ PND+T + VL AC H G +D
Sbjct: 187 QQFGGVVPNDVTLVSVLPACAHLGALD 213


>ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  217 bits (553), Expect = 7e-55
 Identities = 100/143 (69%), Positives = 125/143 (87%)
 Frame = +3

Query: 3   QNEKYSDAIDLFRQMLRVSGCGPNDVTFVNVLSACAHLGALDLGKWIDRYIRRSGMELNL 182
           QNEKY+DAI+LFRQM    G  PNDVT V+VLSACAHLGALDLGKWI R+IRR+ +E+ L
Sbjct: 267 QNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGL 326

Query: 183 FLGNALEDMFAKCGCLKDARRVFNEMHDRDVITWSILISGLAMHGHAGEAFGYFYEMLKC 362
           FLGNAL DM+AKCGC+ +A+ VF+EMH+RDVI+WSI+I GLAM+G+A EAF +F EM++ 
Sbjct: 327 FLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIED 386

Query: 363 GIKPNDITFMGVLSACTHAGLVD 431
           G++PNDI+FMG+L+ACTHAGLVD
Sbjct: 387 GLEPNDISFMGLLTACTHAGLVD 409



 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 41/120 (34%), Positives = 69/120 (57%), Gaps = 1/120 (0%)
 Frame = +3

Query: 3   QNEKYSDAIDLFR-QMLRVSGCGPNDVTFVNVLSACAHLGALDLGKWIDRYIRRSGMELN 179
           Q+  +   I  F  Q++  +   P++ TF +VL ACA L  +  G+ +  ++ + G E N
Sbjct: 102 QHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESN 161

Query: 180 LFLGNALEDMFAKCGCLKDARRVFNEMHDRDVITWSILISGLAMHGHAGEAFGYFYEMLK 359
           LF+ N+L D++ K GC   A+++F+EM  RDV++W+ LISG    G   +A   F  M++
Sbjct: 162 LFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMME 221


>ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 632

 Score =  216 bits (549), Expect = 2e-54
 Identities = 99/143 (69%), Positives = 125/143 (87%)
 Frame = +3

Query: 3   QNEKYSDAIDLFRQMLRVSGCGPNDVTFVNVLSACAHLGALDLGKWIDRYIRRSGMELNL 182
           +NEKY+DAI+LFRQM    G  PNDVT V+VLSACAHLGALDLGKWI R+IRR+ +E+ L
Sbjct: 236 RNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGL 295

Query: 183 FLGNALEDMFAKCGCLKDARRVFNEMHDRDVITWSILISGLAMHGHAGEAFGYFYEMLKC 362
           FLGNAL DM+AKCGC+ +A+ VF+EMH+RDVI+WSI+I GLAM+G+A EAF +F EM++ 
Sbjct: 296 FLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIED 355

Query: 363 GIKPNDITFMGVLSACTHAGLVD 431
           G++PNDI+FMG+L+ACTHAGLVD
Sbjct: 356 GLEPNDISFMGLLTACTHAGLVD 378



 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 54/176 (30%), Positives = 86/176 (48%), Gaps = 33/176 (18%)
 Frame = +3

Query: 3   QNEKYSDAIDLFR-QMLRVSGCGPNDVTFVNVLSACAHLGALDLGKWIDRYIRRSGMELN 179
           Q+  +   I  F  Q++  +   P++ TF +VL ACA L  +  G+ +  ++ + G E N
Sbjct: 102 QHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESN 161

Query: 180 LFLGNALEDMFAKCGCLKDARRVFNEMHDRDVITWSILISGLAMHGHAGEAFGYFYEML- 356
           LF+ N+L D++ K GC   A+++F+EM  RDV++W+ LISG    G   +A   F  M+ 
Sbjct: 162 LFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMME 221

Query: 357 -------------------------------KCGIKPNDITFMGVLSACTHAGLVD 431
                                          + G+ PND+T + VLSAC H G +D
Sbjct: 222 KNLVSWSTMISGYARNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALD 277


>ref|XP_002275535.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 513

 Score =  200 bits (509), Expect = 9e-50
 Identities = 90/143 (62%), Positives = 118/143 (82%)
 Frame = +3

Query: 3   QNEKYSDAIDLFRQMLRVSGCGPNDVTFVNVLSACAHLGALDLGKWIDRYIRRSGMELNL 182
           QN KYSDAI++F +M +V G  P+DVT V+VLSACAH+GALD G+WIDR++   G  LNL
Sbjct: 222 QNGKYSDAIEVFHEMQKVGGVVPDDVTLVSVLSACAHVGALDFGRWIDRFVGWRGRGLNL 281

Query: 183 FLGNALEDMFAKCGCLKDARRVFNEMHDRDVITWSILISGLAMHGHAGEAFGYFYEMLKC 362
           +LGNAL DM+AKCG +++ARR+F+ M +RDVI+WS +I G   HG A EAFGY+ +ML+C
Sbjct: 282 YLGNALIDMYAKCGTMEEARRIFDGMRERDVISWSTMICGSGTHGDADEAFGYYSKMLEC 341

Query: 363 GIKPNDITFMGVLSACTHAGLVD 431
           G+KPN++TFMG+LSAC+HAGLVD
Sbjct: 342 GVKPNEVTFMGLLSACSHAGLVD 364



 Score = 94.7 bits (234), Expect = 7e-18
 Identities = 56/172 (32%), Positives = 89/172 (51%), Gaps = 33/172 (19%)
 Frame = +3

Query: 15  YSDAIDLF-RQMLRVSGCGPNDVTFVNVLSACAHLGALDLGKWIDRYIRRSGMELNLFLG 191
           +  A++ F RQ+   S   PN+  + +++ ACA L A+  G  +   + +SG++ N+ LG
Sbjct: 92  WEHALNCFNRQLSLPSAPNPNEYIYTSLIKACAGLEAIADGLKVHAVVIKSGLDNNIHLG 151

Query: 192 NALEDMFAK-------------------------------CGCLKDARRVFNEMHDRDVI 278
            +L DM+ K                               CG L+ ARRVF++M +RDVI
Sbjct: 152 TSLVDMYFKFREPASAGQVFDEMPLRDVVSWNTMVSGYCLCGDLESARRVFDQMLERDVI 211

Query: 279 TWSILISGLAMHGHAGEAFGYFYEMLKC-GIKPNDITFMGVLSACTHAGLVD 431
           +W+ +I G   +G   +A   F+EM K  G+ P+D+T + VLSAC H G +D
Sbjct: 212 SWNAMIGGYVQNGKYSDAIEVFHEMQKVGGVVPDDVTLVSVLSACAHVGALD 263


>ref|XP_002515531.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545475|gb|EEF46980.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 397

 Score =  156 bits (394), Expect = 2e-36
 Identities = 72/138 (52%), Positives = 103/138 (74%)
 Frame = +3

Query: 18  SDAIDLFRQMLRVSGCGPNDVTFVNVLSACAHLGALDLGKWIDRYIRRSGMELNLFLGNA 197
           SDAIDLFR+M     C P+++T V+VLSAC  LGAL+LGKW++ YI +  ++ ++ L NA
Sbjct: 220 SDAIDLFREMQIEGVCRPDEITMVSVLSACTDLGALELGKWVESYIEKEKVQKSVELCNA 279

Query: 198 LEDMFAKCGCLKDARRVFNEMHDRDVITWSILISGLAMHGHAGEAFGYFYEMLKCGIKPN 377
           L DMFAKCG +  A ++F  M DR +++W+ +I+GLAMHG   EA  +F EM+K G+ P+
Sbjct: 280 LIDMFAKCGDVDKAIKLFRNMKDRTIVSWTSVIAGLAMHGRGLEAVEFFEEMIKSGVLPD 339

Query: 378 DITFMGVLSACTHAGLVD 431
           D+ F+G+LSAC+H+GLVD
Sbjct: 340 DVAFIGLLSACSHSGLVD 357



 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 51/145 (35%), Positives = 81/145 (55%), Gaps = 3/145 (2%)
 Frame = +3

Query: 6   NEKYSDAIDLFRQMLRVSGCGPNDVTFVNVLSACAHLGALDLGKWIDRYIRRSGMELNLF 185
           N     A+ +++ ML      PN  T+  VL ACA +G L+LGK +   + + G + ++ 
Sbjct: 114 NVSKGKALCMYKLMLEYDVL-PNKFTYPFVLKACAGIGYLNLGKSVHGSVLKFGFDNDVH 172

Query: 186 LGNALEDMFAKCGC--LKDARRVFNEMHDRDVITWSILISGLAMHGHAGEAFGYFYEMLK 359
           + N +  M+  CG   ++ AR VF+EM  RD ++WS +I G A  G   +A   F EM  
Sbjct: 173 VQNTMVHMYC-CGRDGIEFAREVFDEMCKRDPVSWSAMIGGYARLGRCSDAIDLFREMQI 231

Query: 360 CGI-KPNDITFMGVLSACTHAGLVD 431
            G+ +P++IT + VLSACT  G ++
Sbjct: 232 EGVCRPDEITMVSVLSACTDLGALE 256