BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00035630
         (539 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002325119.1| predicted protein [Populus trichocarpa] gi|2...   211   4e-53
emb|CBI36559.3| unnamed protein product [Vitis vinifera]              205   4e-51
ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   205   4e-51
sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymeras...   197   6e-49
emb|CBL69149.1| RNA polymerase [Nuphar advena]                        196   2e-48

>ref|XP_002325119.1| predicted protein [Populus trichocarpa] gi|222866553|gb|EEF03684.1|
           predicted protein [Populus trichocarpa]
          Length = 882

 Score =  211 bits (538), Expect = 4e-53
 Identities = 107/179 (59%), Positives = 122/179 (68%)
 Frame = +3

Query: 3   LFLPSYVMRTHGARQQQDAMKSVPRKQMEKVFEALDTLGQTKWRVNKRVLAAVESLWESG 182
           LFLPSYVMRTHG+RQQQ A++SVP KQM+KVFEALDTLG TKWRVN+R+L  VE +W SG
Sbjct: 329 LFLPSYVMRTHGSRQQQVAVRSVPGKQMQKVFEALDTLGNTKWRVNRRLLDVVERIWTSG 388

Query: 183 GNVAGLVDREDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPLSD 362
           GN+AGLVDRED                                            KP SD
Sbjct: 389 GNIAGLVDRED---------------------------------------IPIPEKPSSD 409

Query: 363 DGTEMQRWKWSMKKVNKCNRERHAQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYP 539
           D TE+Q+WKWS++K  K N+ERH+QRCD ELKLSVARK+KDEEGFYYPHNLDFRGRAYP
Sbjct: 410 DLTEIQKWKWSVRKAKKINQERHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYP 468


>emb|CBI36559.3| unnamed protein product [Vitis vinifera]
          Length = 808

 Score =  205 bits (521), Expect = 4e-51
 Identities = 101/179 (56%), Positives = 121/179 (67%)
 Frame = +3

Query: 3   LFLPSYVMRTHGARQQQDAMKSVPRKQMEKVFEALDTLGQTKWRVNKRVLAAVESLWESG 182
           LFLPSYVMRTHG+R+QQDA+KSVPR+Q++KVFEALDTLG TKWR+N+RVL+ VES+W  G
Sbjct: 255 LFLPSYVMRTHGSRKQQDAVKSVPRRQLQKVFEALDTLGNTKWRINRRVLSVVESIWARG 314

Query: 183 GNVAGLVDREDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPLSD 362
           GN+ GLVDRE+                                            KP ++
Sbjct: 315 GNLGGLVDREN---------------------------------------VPLPEKPSTE 335

Query: 363 DGTEMQRWKWSMKKVNKCNRERHAQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYP 539
           D TE+Q WKW+ +K  K N+ERH+ RCD E+KLSVARKMKDEEGFYYPHNLDFRGRAYP
Sbjct: 336 DLTEIQNWKWNARKAKKINQERHSLRCDTEIKLSVARKMKDEEGFYYPHNLDFRGRAYP 394


>ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis
           vinifera]
          Length = 979

 Score =  205 bits (521), Expect = 4e-51
 Identities = 101/179 (56%), Positives = 121/179 (67%)
 Frame = +3

Query: 3   LFLPSYVMRTHGARQQQDAMKSVPRKQMEKVFEALDTLGQTKWRVNKRVLAAVESLWESG 182
           LFLPSYVMRTHG+R+QQDA+KSVPR+Q++KVFEALDTLG TKWR+N+RVL+ VES+W  G
Sbjct: 426 LFLPSYVMRTHGSRKQQDAVKSVPRRQLQKVFEALDTLGNTKWRINRRVLSVVESIWARG 485

Query: 183 GNVAGLVDREDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPLSD 362
           GN+ GLVDRE+                                            KP ++
Sbjct: 486 GNLGGLVDREN---------------------------------------VPLPEKPSTE 506

Query: 363 DGTEMQRWKWSMKKVNKCNRERHAQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYP 539
           D TE+Q WKW+ +K  K N+ERH+ RCD E+KLSVARKMKDEEGFYYPHNLDFRGRAYP
Sbjct: 507 DLTEIQNWKWNARKAKKINQERHSLRCDTEIKLSVARKMKDEEGFYYPHNLDFRGRAYP 565


>sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymerase 3, chloroplastic;
           AltName: Full=NsRpoT-C; AltName: Full=T7
           bacteriophage-type single subunit RNA polymerase 3;
           Flags: Precursor gi|59800203|sp|P69243.1|RPO3A_TOBAC
           RecName: Full=DNA-directed RNA polymerase 3A,
           chloroplastic; AltName: Full=NictaRpoT3-syl; AltName:
           Full=T7 bacteriophage-type single subunit RNA polymerase
           3A; Flags: Precursor gi|21425641|emb|CAC82576.3|
           phage-type RNA polymerase [Nicotiana sylvestris]
           gi|21425679|emb|CAC95027.2| plastid RNA polymerase
           [Nicotiana tabacum] gi|24475541|dbj|BAC22693.1| T7
           bacteriophage-type single subunit RNA polymerase
           [Nicotiana sylvestris] gi|24475543|dbj|BAC22694.1| T7
           bacteriophage-type single subunit RNA polymerase
           [Nicotiana sylvestris]
          Length = 977

 Score =  197 bits (502), Expect = 6e-49
 Identities = 98/179 (54%), Positives = 119/179 (66%)
 Frame = +3

Query: 3   LFLPSYVMRTHGARQQQDAMKSVPRKQMEKVFEALDTLGQTKWRVNKRVLAAVESLWESG 182
           LFLPSY+MRTHG+R+QQDA++SVP KQM++V+EALDTLG TKWRVNKR+L+ VES+W  G
Sbjct: 425 LFLPSYLMRTHGSRRQQDAVRSVPTKQMQQVYEALDTLGSTKWRVNKRILSVVESIWAGG 484

Query: 183 GNVAGLVDREDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPLSD 362
           GN+AGLVDR+D                                               SD
Sbjct: 485 GNIAGLVDRKDVPIPELH----------------------------------------SD 504

Query: 363 DGTEMQRWKWSMKKVNKCNRERHAQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYP 539
           D  E+++WKW ++K  K N+E H+QRCD ELKLSVARK+KDEEGFYYPHNLDFRGRAYP
Sbjct: 505 DIMEVKKWKWRVRKSKKINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYP 563


>emb|CBL69149.1| RNA polymerase [Nuphar advena]
          Length = 996

 Score =  196 bits (498), Expect = 2e-48
 Identities = 98/179 (54%), Positives = 119/179 (66%)
 Frame = +3

Query: 3   LFLPSYVMRTHGARQQQDAMKSVPRKQMEKVFEALDTLGQTKWRVNKRVLAAVESLWESG 182
           LFLPSYVMRTHGARQQ++A+KS PRKQ++ VFEALDTLG TKWRVNKRVLA V+ +W SG
Sbjct: 444 LFLPSYVMRTHGARQQREAVKSAPRKQLQSVFEALDTLGSTKWRVNKRVLAVVDRIWASG 503

Query: 183 GNVAGLVDREDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPLSD 362
           G++AGLVD +D                                            KP ++
Sbjct: 504 GHLAGLVDCQD---------------------------------------VPLPEKPDTE 524

Query: 363 DGTEMQRWKWSMKKVNKCNRERHAQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYP 539
           D   +++WKWS++   K N ER++QRCD+ELKL+VARKMKDEEGFYYPHNLDFRGRAYP
Sbjct: 525 DEAVLRKWKWSLRNARKENSERYSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYP 583