BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00035620
         (350 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata sub...    66   3e-09
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...    64   1e-08
gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana]              62   4e-08
ref|XP_002454960.1| hypothetical protein SORBIDRAFT_03g002140 [S...    61   1e-07
emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|72678...    60   1e-07

>gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata subsp. lyrata]
          Length = 441

 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
 Frame = +1

Query: 16  WKAYMNALPMGDRLASWKMEGDFSCPLCNTSLEADNHLFFECEWTRKLWFTSSLGLRMEI 195
           W A  N L  GDR+ SW    + SC  C    E  NHLFF C ++R++W     GL  ++
Sbjct: 293 WLATKNRLSTGDRMMSWNAGVNLSCVFCQEQTETRNHLFFTCRYSREVW----SGLTSKL 348

Query: 196 QGRNNTKDW--ISKFISWRNNKNQDIAQAGIQACYILYNIWKTRNEAK 333
             R+ + DW  I K ++ +   N  +         ++Y+IWK RN  +
Sbjct: 349 LTRHYSTDWTTILKLLTDKTLGNNRLFLLRYAFQILVYSIWKERNSRR 396


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
            72.31) [Arabidopsis thaliana]
          Length = 928

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
 Frame = +1

Query: 13   LWKAYMNALPMGDRLASWKMEGDFSCPLCNTSLEADNHLFFECEWTRKLWFTSSLGLRME 192
            +W A  N L  G R+  W ++    C LCN +LE  +HLFF C +T  +W      L   
Sbjct: 778  VWLAIWNKLSTGQRMQHWNLQSSVGCVLCNNNLETRDHLFFSCAYTSGIW----EALAKN 833

Query: 193  IQGRNNTKDWISKFISWRNNKNQD-----IAQAGIQACYILYNIWKTRN 324
            +  R+ T DW    IS+ + +  D     +A++ +QA   +Y IW+ RN
Sbjct: 834  LLQRSYTTDW-QTIISYVSGQCHDRVSCFLARSVLQAS--VYTIWRERN 879


>gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana]
          Length = 653

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 33/110 (30%), Positives = 51/110 (46%)
 Frame = +1

Query: 16  WKAYMNALPMGDRLASWKMEGDFSCPLCNTSLEADNHLFFECEWTRKLWFTSSLGLRMEI 195
           W A  N L  GD++  W      +C LCN ++E  NHLFF C +T ++W   +  +    
Sbjct: 504 WLAVQNRLSTGDKMLQWNRRLSPTCVLCNNNIETRNHLFFSCCYTAEIWENLAKNIYKAK 563

Query: 196 QGRNNTKDWISKFISWRNNKNQDIAQAGIQACYILYNIWKTRNEAKFEQR 345
              N +    S   +WRN     +A+   QA   ++ IW  RN  +  +R
Sbjct: 564 FSTNWSTILTSVSTTWRNRTESFLARYIFQA--TIHTIWHERNGRRHGER 611


>ref|XP_002454960.1| hypothetical protein SORBIDRAFT_03g002140 [Sorghum bicolor]
           gi|241926935|gb|EES00080.1| hypothetical protein
           SORBIDRAFT_03g002140 [Sorghum bicolor]
          Length = 423

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 34/117 (29%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
 Frame = +1

Query: 1   LQMFLWKAYMNALPMGDRLASWKMEGDFSCPLCNTSLEADNHLFFECEWTRKLWFTSSLG 180
           ++ F+W+    A+  G+R++++  + D +C LC  + E D HLFF CE+ R +WF++   
Sbjct: 60  IKTFIWRLIRRAIATGERVSAFTDKTDKACALCGFT-ENDMHLFFHCEFARAVWFSAKTP 118

Query: 181 LRMEI--QGRNNTKDWISKFISWRNNKNQDIAQAGIQACYILYNIWKTRNEAKFEQR 345
           L   +  Q  +  +  +++ IS      Q   +   Q    L+ IWK RN+ +F +R
Sbjct: 119 LLSSVLPQEHDRVQQCLAQIIS-----PQVSDEILTQITTYLWFIWKARNDLRFRKR 170


>emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|7267871|emb|CAB78214.1|
           putative protein [Arabidopsis thaliana]
          Length = 473

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 39/111 (35%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
 Frame = +1

Query: 13  LWKAYMNALPMGDRLASWKMEGDFSCPLCNTSLEADNHLFFECEWTRKLWFTSSLGLRME 192
           +W A  N L  GDR+  W M  D +C LCN +LE+ +HLFF C +  ++W      L   
Sbjct: 322 MWLAVHNRLSTGDRMTLWNMGVDATCILCNKALESRDHLFFSCPFATEIWEP----LAKT 377

Query: 193 IQGRNNTKDWISKFISWRNNKNQDIAQAGIQACYIL----YNIWKTRNEAK 333
           I       DW  + I    ++N     AG  A  IL    Y +W+ RNE K
Sbjct: 378 IYNTCFYTDW--QTIINNVSRNWPDRIAGFLARCILQVTIYTLWRERNERK 426