BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00035529
         (235 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002532904.1| pentatricopeptide repeat-containing protein,...   114   8e-24
ref|XP_004155878.1| PREDICTED: pentatricopeptide repeat-containi...   108   5e-22
ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containi...   108   5e-22
ref|XP_002305377.1| predicted protein [Populus trichocarpa] gi|2...   108   6e-22
ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containi...   107   8e-22

>ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223527338|gb|EEF29484.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 604

 Score =  114 bits (285), Expect = 8e-24
 Identities = 56/77 (72%), Positives = 63/77 (81%)
 Frame = -3

Query: 233 SGYRKVGDMNMARMLFDKAPIKNLVLWTIMISGYAEQGLAKEAFLLYDEMEKVGLEPDSG 54
           SGY K GDM MARMLFDK P KNLV WTI+ISG+AE+GLAKEA  LY++ME  GL+PD G
Sbjct: 259 SGYCKTGDMEMARMLFDKMPFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDG 318

Query: 53  TFTSIIAACAESGLLDL 3
           T  SI+AACAESGLL L
Sbjct: 319 TLISILAACAESGLLVL 335



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 24/74 (32%), Positives = 44/74 (59%)
 Frame = -3

Query: 227 YRKVGDMNMARMLFDKAPIKNLVLWTIMISGYAEQGLAKEAFLLYDEMEKVGLEPDSGTF 48
           Y K G ++ A  +F++  +++LV W  M+ G A  G  ++A  L+ +M++ G +PD  T 
Sbjct: 362 YAKCGRVDKALSIFNEMSMRDLVSWNCMLQGLAMHGHGEKAIQLFSKMQQEGFKPDKVTL 421

Query: 47  TSIIAACAESGLLD 6
            +I+ AC  +G +D
Sbjct: 422 IAILCACTHAGFVD 435


>ref|XP_004155878.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 561

 Score =  108 bits (270), Expect = 5e-22
 Identities = 52/76 (68%), Positives = 63/76 (82%)
 Frame = -3

Query: 230 GYRKVGDMNMARMLFDKAPIKNLVLWTIMISGYAEQGLAKEAFLLYDEMEKVGLEPDSGT 51
           GY K GDM MARMLFDK P+KNLV WTI++SG+AE+GLA+EA  L+D+MEK  L+ D+GT
Sbjct: 284 GYCKAGDMEMARMLFDKMPVKNLVSWTIIVSGFAEKGLAREAISLFDQMEKACLKLDNGT 343

Query: 50  FTSIIAACAESGLLDL 3
             SI+AACAESGLL L
Sbjct: 344 VMSILAACAESGLLGL 359


>ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 601

 Score =  108 bits (270), Expect = 5e-22
 Identities = 52/76 (68%), Positives = 63/76 (82%)
 Frame = -3

Query: 230 GYRKVGDMNMARMLFDKAPIKNLVLWTIMISGYAEQGLAKEAFLLYDEMEKVGLEPDSGT 51
           GY K GDM MARMLFDK P+KNLV WTI++SG+AE+GLA+EA  L+D+MEK  L+ D+GT
Sbjct: 258 GYCKAGDMEMARMLFDKMPVKNLVSWTIIVSGFAEKGLAREAISLFDQMEKACLKLDNGT 317

Query: 50  FTSIIAACAESGLLDL 3
             SI+AACAESGLL L
Sbjct: 318 VMSILAACAESGLLGL 333


>ref|XP_002305377.1| predicted protein [Populus trichocarpa] gi|222848341|gb|EEE85888.1|
           predicted protein [Populus trichocarpa]
          Length = 427

 Score =  108 bits (269), Expect = 6e-22
 Identities = 50/77 (64%), Positives = 63/77 (81%)
 Frame = -3

Query: 233 SGYRKVGDMNMARMLFDKAPIKNLVLWTIMISGYAEQGLAKEAFLLYDEMEKVGLEPDSG 54
           SGY K GDM MARMLFD+ P+KNLV WTI++SGYA +GLAK+A   +++ME+ GL+PD G
Sbjct: 82  SGYCKAGDMEMARMLFDRMPVKNLVSWTIIVSGYAVKGLAKDAIRSFEQMEEAGLKPDDG 141

Query: 53  TFTSIIAACAESGLLDL 3
           T  SI+A+CAESGLL L
Sbjct: 142 TVISILASCAESGLLGL 158


>ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
           [Vitis vinifera]
          Length = 594

 Score =  107 bits (268), Expect = 8e-22
 Identities = 52/76 (68%), Positives = 63/76 (82%)
 Frame = -3

Query: 230 GYRKVGDMNMARMLFDKAPIKNLVLWTIMISGYAEQGLAKEAFLLYDEMEKVGLEPDSGT 51
           GY K GDM+MAR+LFDK P+KNLV WTIMISGYAE+GLAK+A  LY++ME+ GL+ D GT
Sbjct: 254 GYSKAGDMDMARILFDKMPVKNLVPWTIMISGYAEKGLAKDAINLYNQMEEAGLKFDDGT 313

Query: 50  FTSIIAACAESGLLDL 3
             SI++ACA SGLL L
Sbjct: 314 VISILSACAVSGLLGL 329