BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00035506
         (378 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI30660.3| unnamed protein product [Vitis vinifera]              159   2e-37
ref|XP_002267303.1| PREDICTED: pentatricopeptide repeat-containi...   159   2e-37
emb|CAN75464.1| hypothetical protein VITISV_006518 [Vitis vinifera]   157   7e-37
ref|XP_002522543.1| pentatricopeptide repeat-containing protein,...   154   9e-36
ref|XP_002305756.1| predicted protein [Populus trichocarpa] gi|2...   152   3e-35

>emb|CBI30660.3| unnamed protein product [Vitis vinifera]
          Length = 598

 Score =  159 bits (403), Expect = 2e-37
 Identities = 79/130 (60%), Positives = 102/130 (78%), Gaps = 4/130 (3%)
 Frame = +1

Query: 1   VFDEMCKPTVSSYNSMIAGYLKHGQVEESVGLVRKLVLSNQRPDGFTLSMILKLSRAS-- 174
           +FDEM +PT+S+YN MI+GYLKHGQ+EE + LV +L  S ++PDGFT SMILK +  +  
Sbjct: 99  LFDEMHQPTLSAYNYMISGYLKHGQIEELLNLVSRLTFSYEKPDGFTFSMILKATGCASG 158

Query: 175 --VLWSRELGKQVHGMIVKCNVESDDVLFTALVDSYAKNGKVDYARRVFDKVLERNVMCS 348
                +  LGK VH  I++ NVESDDVL+TALVDSY KNGKV YARRVFD +L++NV+CS
Sbjct: 159 GIFPLTYSLGKVVHAQILRSNVESDDVLYTALVDSYVKNGKVGYARRVFDMMLDKNVLCS 218

Query: 349 TAMISGYMNE 378
           T+MISGYM++
Sbjct: 219 TSMISGYMSQ 228



 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 49/153 (32%), Positives = 78/153 (50%), Gaps = 30/153 (19%)
 Frame = +1

Query: 1   VFDEMCKPTVSSYNSMIAGYLKHGQVEESVGLVRK-----LVLSNQRPDGF--------- 138
           VFD M    V    SMI+GY+  G VE++  + ++     +V+ N   +G+         
Sbjct: 206 VFDMMLDKNVLCSTSMISGYMSQGSVEDAEDIFKRTVEKDVVVFNAMIEGYSKSVETARR 265

Query: 139 TLSMILKLSR----------------ASVLWSRELGKQVHGMIVKCNVESDDVLFTALVD 270
           +L + + + R                 SVL   E+G+QV   +VK N  +D  + +AL+D
Sbjct: 266 SLEVYIDMQRLNFRPTMSTFASVIGACSVLTVFEIGQQVQSQLVKMNFYNDIKMGSALID 325

Query: 271 SYAKNGKVDYARRVFDKVLERNVMCSTAMISGY 369
            Y+K G+++ ARRVFD + E+NV   T+MI GY
Sbjct: 326 MYSKCGRIEDARRVFDHMPEKNVFSWTSMIDGY 358


>ref|XP_002267303.1| PREDICTED: pentatricopeptide repeat-containing protein At1g28690,
           mitochondrial [Vitis vinifera]
          Length = 533

 Score =  159 bits (403), Expect = 2e-37
 Identities = 79/130 (60%), Positives = 102/130 (78%), Gaps = 4/130 (3%)
 Frame = +1

Query: 1   VFDEMCKPTVSSYNSMIAGYLKHGQVEESVGLVRKLVLSNQRPDGFTLSMILKLSRAS-- 174
           +FDEM +PT+S+YN MI+GYLKHGQ+EE + LV +L  S ++PDGFT SMILK +  +  
Sbjct: 99  LFDEMHQPTLSAYNYMISGYLKHGQIEELLNLVSRLTFSYEKPDGFTFSMILKATGCASG 158

Query: 175 --VLWSRELGKQVHGMIVKCNVESDDVLFTALVDSYAKNGKVDYARRVFDKVLERNVMCS 348
                +  LGK VH  I++ NVESDDVL+TALVDSY KNGKV YARRVFD +L++NV+CS
Sbjct: 159 GIFPLTYSLGKVVHAQILRSNVESDDVLYTALVDSYVKNGKVGYARRVFDMMLDKNVLCS 218

Query: 349 TAMISGYMNE 378
           T+MISGYM++
Sbjct: 219 TSMISGYMSQ 228



 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 49/153 (32%), Positives = 78/153 (50%), Gaps = 30/153 (19%)
 Frame = +1

Query: 1   VFDEMCKPTVSSYNSMIAGYLKHGQVEESVGLVRK-----LVLSNQRPDGF--------- 138
           VFD M    V    SMI+GY+  G VE++  + ++     +V+ N   +G+         
Sbjct: 206 VFDMMLDKNVLCSTSMISGYMSQGSVEDAEDIFKRTVEKDVVVFNAMIEGYSKSVETARR 265

Query: 139 TLSMILKLSR----------------ASVLWSRELGKQVHGMIVKCNVESDDVLFTALVD 270
           +L + + + R                 SVL   E+G+QV   +VK N  +D  + +AL+D
Sbjct: 266 SLEVYIDMQRLNFRPTMSTFASVIGACSVLTVFEIGQQVQSQLVKMNFYNDIKMGSALID 325

Query: 271 SYAKNGKVDYARRVFDKVLERNVMCSTAMISGY 369
            Y+K G+++ ARRVFD + E+NV   T+MI GY
Sbjct: 326 MYSKCGRIEDARRVFDHMPEKNVFSWTSMIDGY 358


>emb|CAN75464.1| hypothetical protein VITISV_006518 [Vitis vinifera]
          Length = 504

 Score =  157 bits (398), Expect = 7e-37
 Identities = 78/130 (60%), Positives = 101/130 (77%), Gaps = 4/130 (3%)
 Frame = +1

Query: 1   VFDEMCKPTVSSYNSMIAGYLKHGQVEESVGLVRKLVLSNQRPDGFTLSMILKLSRAS-- 174
           +FDEM +PT+S+YN MI+GYLKHGQ+EE + LV +L  S ++PDGFT SMILK +  +  
Sbjct: 99  LFDEMHQPTLSAYNYMISGYLKHGQIEELLNLVSRLTFSYEKPDGFTFSMILKATGCASG 158

Query: 175 --VLWSRELGKQVHGMIVKCNVESDDVLFTALVDSYAKNGKVDYARRVFDKVLERNVMCS 348
                +  LGK VH  I++ NVE DDVL+TALVDSY KNGKV YARRVFD +L++NV+CS
Sbjct: 159 GIFPLTYSLGKVVHAQILRSNVEXDDVLYTALVDSYVKNGKVGYARRVFDMMLDKNVLCS 218

Query: 349 TAMISGYMNE 378
           T+MISGYM++
Sbjct: 219 TSMISGYMSQ 228



 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 48/153 (31%), Positives = 78/153 (50%), Gaps = 30/153 (19%)
 Frame = +1

Query: 1   VFDEMCKPTVSSYNSMIAGYLKHGQVEESVGLVRK-----LVLSNQRPDGF--------- 138
           VFD M    V    SMI+GY+  G VE++  + ++     +V+ N   +G+         
Sbjct: 206 VFDMMLDKNVLCSTSMISGYMSQGSVEDAEDIFKRTVEKDVVVFNAMIEGYSKSVETARR 265

Query: 139 TLSMILKLSR----------------ASVLWSRELGKQVHGMIVKCNVESDDVLFTALVD 270
           +L + + + R                 SVL   E+G+QV   +VK +  +D  + +AL+D
Sbjct: 266 SLEVYIDMQRLNFRPTMSTFASVIGACSVLTVXEIGQQVQSQLVKMBFYNDIKMGSALID 325

Query: 271 SYAKNGKVDYARRVFDKVLERNVMCSTAMISGY 369
            Y+K G+++ ARRVFD + E+NV   T+MI GY
Sbjct: 326 MYSKCGRIEDARRVFDHMPEKNVFSWTSMIDGY 358


>ref|XP_002522543.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223538234|gb|EEF39843.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 530

 Score =  154 bits (388), Expect = 9e-36
 Identities = 78/127 (61%), Positives = 100/127 (78%), Gaps = 2/127 (1%)
 Frame = +1

Query: 1   VFDEMCKPTVSSYNSMIAGYLKHGQVEESVGLVRKLVLSNQRPDGFTLSMILKLSRA--S 174
           +FDE+ + T+S+YN +I GYLK G V++S+ LVR+LVL  QRPDGFT SMILK S +  +
Sbjct: 99  MFDELPQRTLSAYNYLIGGYLKLGLVQDSMNLVRRLVLEGQRPDGFTYSMILKASTSGDN 158

Query: 175 VLWSRELGKQVHGMIVKCNVESDDVLFTALVDSYAKNGKVDYARRVFDKVLERNVMCSTA 354
           V  S  LG  VHG I+K  VE DDVL+TALVDSY K+G+V YAR+VFD ++E+NV+CST+
Sbjct: 159 VTLSCNLGSVVHGQILKSEVEPDDVLYTALVDSYVKSGRVGYARKVFDMMMEKNVICSTS 218

Query: 355 MISGYMN 375
           MISGYMN
Sbjct: 219 MISGYMN 225



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 39/124 (31%), Positives = 72/124 (58%), Gaps = 1/124 (0%)
 Frame = +1

Query: 1   VFDEMCKPTVSSYNSMIAGYLKHGQV-EESVGLVRKLVLSNQRPDGFTLSMILKLSRASV 177
           +F+   +  V  +N+MI GY K  Q  E+++ +  ++     RP+  T + ++     SV
Sbjct: 235 IFERTVEKDVVVFNAMIEGYSKSVQTAEKALEVYVEMQRYGFRPNLSTFASVI--GACSV 292

Query: 178 LWSRELGKQVHGMIVKCNVESDDVLFTALVDSYAKNGKVDYARRVFDKVLERNVMCSTAM 357
           L   E+G+QV G ++K    ++    +AL+D Y+K G+++ ARR F+++ E+NV   ++M
Sbjct: 293 LAGFEIGQQVQGQLLKREFFTNVKTGSALIDMYSKCGRIEDARRAFEQMPEKNVFSWSSM 352

Query: 358 ISGY 369
           I GY
Sbjct: 353 IDGY 356


>ref|XP_002305756.1| predicted protein [Populus trichocarpa] gi|222848720|gb|EEE86267.1|
           predicted protein [Populus trichocarpa]
          Length = 530

 Score =  152 bits (384), Expect = 3e-35
 Identities = 76/128 (59%), Positives = 100/128 (78%), Gaps = 2/128 (1%)
 Frame = +1

Query: 1   VFDEMCKPTVSSYNSMIAGYLKHGQVEESVGLVRKLVLSNQRPDGFTLSMILKLSR--AS 174
           +FDE+ + T+S+YN MI GYL+ G  EES+ +VR+L L  +RPDGFT SMILK S   A+
Sbjct: 99  LFDELPQRTLSAYNYMIGGYLRQGLFEESISMVRRLDLDGERPDGFTFSMILKASTSGAN 158

Query: 175 VLWSRELGKQVHGMIVKCNVESDDVLFTALVDSYAKNGKVDYARRVFDKVLERNVMCSTA 354
           V+  R  G  VH  I+K +V++DDVL+TALVDSY K+GKV YAR+VFD +LE+NV+CST+
Sbjct: 159 VMLPRNTGGLVHAQILKLDVKADDVLYTALVDSYVKSGKVGYARKVFDLMLEKNVICSTS 218

Query: 355 MISGYMNE 378
           MISGYMN+
Sbjct: 219 MISGYMNQ 226



 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 30/153 (19%)
 Frame = +1

Query: 1   VFDEMCKPTVSSYNSMIAGYLKHGQVEESVGLVRK-----LVLSNQRPDGFT-------- 141
           VFD M +  V    SMI+GY+  G VE++  +  K     +V+ N   +G++        
Sbjct: 204 VFDLMLEKNVICSTSMISGYMNQGFVEDAEEIFWKTVEKDIVVFNAMIEGYSKSVETAMK 263

Query: 142 -LSMILKLSR----------------ASVLWSRELGKQVHGMIVKCNVESDDVLFTALVD 270
            L + + + R                 SVL   E+G+QV   ++K    +   + +AL+D
Sbjct: 264 ALEVYVDMQRFGLRPNGSTFASVSGACSVLAGFEIGQQVQCQLMKSGFFNGVKMGSALID 323

Query: 271 SYAKNGKVDYARRVFDKVLERNVMCSTAMISGY 369
            Y+K G+++ ARRVF+ +  RNV   T+MI GY
Sbjct: 324 MYSKCGRIEDARRVFNYMPVRNVFSWTSMIDGY 356