BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00035392
         (322 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa ...   102   4e-20
gb|ABA97040.1| retrotransposon protein, putative, unclassified [...    94   2e-17
gb|EEE66599.1| hypothetical protein OsJ_23164 [Oryza sativa Japo...    94   2e-17
emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabid...    93   2e-17
gb|AAP12989.1| putative reverse transcriptase [Oryza sativa Japo...    92   3e-17

>gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
          Length = 1656

 Score =  102 bits (253), Expect = 4e-20
 Identities = 48/105 (45%), Positives = 67/105 (63%)
 Frame = -1

Query: 316  PLTPKQFRPISLANVSYXXXXXXXXXXXRPLLSKLIGPNQSAFLQDRDIHDNVLLAHEAF 137
            P  P  +RPI+L N SY           +P +S+LI  NQSAF+ +R I DNV++AHE +
Sbjct: 1107 PTHPSHYRPIALCNFSYKILTKIIASRLQPFMSELISDNQSAFVSNRQIQDNVIIAHEIY 1166

Query: 136  HFIRS*KNRNKRIYALKVDMQKAYDRIE*NFLKAVLLRFGFHDDW 2
            H ++  ++ N   + LK+DM KAYDR+E NFL+AVL + GF D W
Sbjct: 1167 HHLKLTRSCNNGAFGLKLDMNKAYDRVEWNFLEAVLRKMGFVDSW 1211


>gb|ABA97040.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1913

 Score = 93.6 bits (231), Expect = 2e-17
 Identities = 49/107 (45%), Positives = 63/107 (58%)
 Frame = -1

Query: 322  ENPLTPKQFRPISLANVSYXXXXXXXXXXXRPLLSKLIGPNQSAFLQDRDIHDNVLLAHE 143
            + P+  K FRPISL NV Y           RP+L +L+  NQSAF+  R I DN LLA E
Sbjct: 1071 DQPMELKDFRPISLCNVIYKIVSKCLVNRLRPILDELVSQNQSAFVPGRMITDNALLAFE 1130

Query: 142  AFHFIRS*KNRNKRIYALKVDMQKAYDRIE*NFLKAVLLRFGFHDDW 2
             FHFI+  KN NK   A K+D+ KAYDR++  FL+  + + GF   W
Sbjct: 1131 CFHFIQRNKNANKAACAYKLDLSKAYDRVDWVFLEQTMCKLGFAPRW 1177


>gb|EEE66599.1| hypothetical protein OsJ_23164 [Oryza sativa Japonica Group]
          Length = 813

 Score = 93.6 bits (231), Expect = 2e-17
 Identities = 49/107 (45%), Positives = 63/107 (58%)
 Frame = -1

Query: 322 ENPLTPKQFRPISLANVSYXXXXXXXXXXXRPLLSKLIGPNQSAFLQDRDIHDNVLLAHE 143
           + P+  K FRPISL NV Y           RP+L +L+  NQSAF+  R I DN LLA E
Sbjct: 570 DQPMELKDFRPISLCNVIYKIVSKCLVNRLRPILDELVSQNQSAFVPGRMITDNALLAFE 629

Query: 142 AFHFIRS*KNRNKRIYALKVDMQKAYDRIE*NFLKAVLLRFGFHDDW 2
            FHFI+  KN NK   A K+D+ KAYDR++  FL+  + + GF   W
Sbjct: 630 CFHFIQRNKNANKAACAYKLDLSKAYDRVDWVFLEQTMCKLGFAPRW 676


>emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
           gi|7267666|emb|CAB78094.1| RNA-directed DNA
           polymerase-like protein [Arabidopsis thaliana]
          Length = 1274

 Score = 93.2 bits (230), Expect = 2e-17
 Identities = 49/105 (46%), Positives = 62/105 (59%)
 Frame = -1

Query: 316 PLTPKQFRPISLANVSYXXXXXXXXXXXRPLLSKLIGPNQSAFLQDRDIHDNVLLAHEAF 137
           P     +RPI+L NV Y           +P LS+LI  +QSAF+  R I DNVL+ HE  
Sbjct: 439 PRKVSDYRPIALCNVQYKIVAKILTRRLQPWLSELISLHQSAFVPGRAIADNVLITHEIL 498

Query: 136 HFIRS*KNRNKRIYALKVDMQKAYDRIE*NFLKAVLLRFGFHDDW 2
           HF+R    +     A+K DM KAYDRI+ NFL+ VL+R GFHD W
Sbjct: 499 HFLRVSGAKKYCSMAIKTDMSKAYDRIKWNFLQEVLMRLGFHDKW 543


>gb|AAP12989.1| putative reverse transcriptase [Oryza sativa Japonica Group]
           gi|108708744|gb|ABF96539.1| retrotransposon protein,
           putative, unclassified [Oryza sativa Japonica Group]
           gi|125544271|gb|EAY90410.1| hypothetical protein
           OsI_11988 [Oryza sativa Indica Group]
           gi|125586616|gb|EAZ27280.1| hypothetical protein
           OsJ_11216 [Oryza sativa Japonica Group]
          Length = 818

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 49/106 (46%), Positives = 63/106 (59%)
 Frame = -1

Query: 319 NPLTPKQFRPISLANVSYXXXXXXXXXXXRPLLSKLIGPNQSAFLQDRDIHDNVLLAHEA 140
           NP   K +RPISL NV Y           RPLL  LI  NQSAF+  R I DN L+A E 
Sbjct: 18  NPEEMKDYRPISLCNVVYKVVAKCLVNRLRPLLHDLISENQSAFVPGRMITDNALIAFEC 77

Query: 139 FHFIRS*KNRNKRIYALKVDMQKAYDRIE*NFLKAVLLRFGFHDDW 2
           FH+I+     ++   ALK+D+ KA+DR++ +FL  VLLR GF + W
Sbjct: 78  FHYIQKCNRESQMFCALKLDLSKAFDRVDWDFLDGVLLRLGFAEKW 123