BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00035203
         (268 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]            78   7e-13
ref|NP_189068.2| RNA-directed DNA polymerase (reverse transcript...    77   2e-12
gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata sub...    75   6e-12
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal...    75   7e-12
gb|ABD33260.1| non-LTR retroelement reverse transcriptase-like p...    73   3e-11

>dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]
          Length = 478

 Score = 78.2 bits (191), Expect = 7e-13
 Identities = 35/85 (41%), Positives = 55/85 (64%)
 Frame = +1

Query: 1   RLHLIISVLSSFHVYWSRSFMLPKAILDHIVSICSNFLWSGPELSNKMHQASWSTMCLTR 180
           RL LI SV+ S   +W  +F LP A +  I SICS+FLWSGPEL+ K  + +WS +C  +
Sbjct: 66  RLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPK 125

Query: 181 EQGGLNIMDIHKWSKAAYCGLVFKV 255
           ++GGL I  + + +K +   L++++
Sbjct: 126 DEGGLGIRSLKEANKVSLLKLIWRM 150


>ref|NP_189068.2| RNA-directed DNA polymerase (reverse transcriptase)-related protein
           [Arabidopsis thaliana] gi|332643359|gb|AEE76880.1|
           RNA-directed DNA polymerase (reverse
           transcriptase)-related protein [Arabidopsis thaliana]
          Length = 746

 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 34/78 (43%), Positives = 51/78 (65%)
 Frame = +1

Query: 1   RLHLIISVLSSFHVYWSRSFMLPKAILDHIVSICSNFLWSGPELSNKMHQASWSTMCLTR 180
           RL LI SV+ S   +W  +F LP A +  I SICS+FLWSGPEL+ K  + +WS +C  +
Sbjct: 66  RLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPK 125

Query: 181 EQGGLNIMDIHKWSKAAY 234
           ++GGL I  + + +K ++
Sbjct: 126 DEGGLGIRSLKEANKGSF 143


>gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata subsp. lyrata]
          Length = 441

 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 33/85 (38%), Positives = 53/85 (62%)
 Frame = +1

Query: 1   RLHLIISVLSSFHVYWSRSFMLPKAILDHIVSICSNFLWSGPELSNKMHQASWSTMCLTR 180
           RL LI SV+ S   +W  +F LP A +  I  +CS FLWSGPEL+ K  + SW+ +C+ +
Sbjct: 30  RLQLISSVIHSLTNFWMSAFRLPNACIKEIDGLCSAFLWSGPELNRKKAKVSWNDVCMPK 89

Query: 181 EQGGLNIMDIHKWSKAAYCGLVFKV 255
           E+GGL +  + + +K     L++++
Sbjct: 90  EEGGLGLRSLTEANKVCCLKLIWRL 114


>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 36/89 (40%), Positives = 54/89 (60%)
 Frame = +1

Query: 1   RLHLIISVLSSFHVYWSRSFMLPKAILDHIVSICSNFLWSGPELSNKMHQASWSTMCLTR 180
           RL+LI SVL S   +W  +F LP A L  I SICS FLWSGPEL  +  + SW  +C  +
Sbjct: 215 RLNLISSVLWSTMNFWMSAFRLPSACLKEINSICSAFLWSGPELHRRKAKVSWDDICKPK 274

Query: 181 EQGGLNIMDIHKWSKAAYCGLVFKVATKD 267
           ++GGL +  + + +  +   L+++V + D
Sbjct: 275 QEGGLGLRSLTEANVVSVLKLIWRVTSND 303


>gb|ABD33260.1| non-LTR retroelement reverse transcriptase-like protein, related
           [Medicago truncatula]
          Length = 120

 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 33/82 (40%), Positives = 50/82 (60%)
 Frame = +1

Query: 1   RLHLIISVLSSFHVYWSRSFMLPKAILDHIVSICSNFLWSGPELSNKMHQASWSTMCLTR 180
           RL LI SVL     YWS+ F+LP+ +L  I + C  FLW+G   ++K    +W  +CL +
Sbjct: 39  RLQLIKSVLFGVQTYWSQVFVLPQKVLKLIQTACRVFLWTGKSGTSKRALIAWERICLPK 98

Query: 181 EQGGLNIMDIHKWSKAAYCGLV 246
             GG N++D+  W++AA C L+
Sbjct: 99  TAGGWNVIDLKVWNQAAICKLL 120