BLASTX nr result

ID: Coptis24_contig00035136 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00035136
         (518 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002320378.1| predicted protein [Populus trichocarpa] gi|2...    59   3e-07
ref|XP_002520702.1| conserved hypothetical protein [Ricinus comm...    57   2e-06

>ref|XP_002320378.1| predicted protein [Populus trichocarpa] gi|222861151|gb|EEE98693.1|
           predicted protein [Populus trichocarpa]
          Length = 136

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 46/144 (31%), Positives = 68/144 (47%), Gaps = 14/144 (9%)
 Frame = -2

Query: 394 IDVSSFFVVESSGDSEVDLDPIISTGSKNIALAENDAASC-CDEYDVASMDD-----CVD 233
           +DVS F +VE++GDSEVD DP +ST   ++   ++DA SC CD  D + + D     C +
Sbjct: 8   VDVSPFLLVEAAGDSEVDSDPTMST--IDLVDDDDDAESCSCDTSDHSCVSDIIKGACSE 65

Query: 232 IELQENNKEDCYHDNEVNYGSHIFGDGSWTCQK--------MDFSYQSCISIQTAEHEHE 77
           +E  + N      D++         +G   CQ         +    +SC+S+        
Sbjct: 66  VEAYQVNYNVVDDDDDEEEEE----EGVEVCQSWVHHVHVGLPVKQKSCVSV-------- 113

Query: 76  KQPKGGDDVSEELMNEEEKSRLFW 5
                  D S E MNE+EK RLFW
Sbjct: 114 -------DSSNESMNEKEKDRLFW 130


>ref|XP_002520702.1| conserved hypothetical protein [Ricinus communis]
           gi|223540087|gb|EEF41664.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 151

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 48/157 (30%), Positives = 77/157 (49%), Gaps = 20/157 (12%)
 Frame = -2

Query: 415 EMDLRYVIDVSSFFVVESSGDSEVDLDPIISTGSKNIALA---ENDAASC-CDEYDVASM 248
           +MD +  +D+SS F+VE+SGDSEV LDP      K++A A    +DA SC CD  D    
Sbjct: 11  QMDTKKRVDLSSCFLVEASGDSEVGLDP------KDLAAAPDDNDDAESCSCDVSDCYYY 64

Query: 247 DDCV-------DIE------LQENNKEDCYHDNEVNYGSHIFGDGSWT---CQKMDFSYQ 116
             CV       ++E      + ++NKE  Y ++E      +    +W       +  + +
Sbjct: 65  YSCVGDNTNSGEVEEASVHGVTDHNKEQ-YQEHEDEDEDEVQSYRTWVDGHINGVQVNKK 123

Query: 115 SCISIQTAEHEHEKQPKGGDDVSEELMNEEEKSRLFW 5
           SC+S+++               + E MNE+E++RLFW
Sbjct: 124 SCVSVES---------------TSEPMNEKERNRLFW 145


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