BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00034810
         (296 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]         94   9e-18
ref|XP_003637737.1| Pentatricopeptide repeat-containing protein ...    93   2e-17
ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containi...    92   3e-17
ref|XP_002282803.1| PREDICTED: pentatricopeptide repeat-containi...    92   4e-17
emb|CAN74403.1| hypothetical protein VITISV_043633 [Vitis vinifera]    92   4e-17

>gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score = 94.4 bits (233), Expect = 9e-18
 Identities = 44/86 (51%), Positives = 58/86 (67%)
 Frame = -1

Query: 260 PVPISIKTMLSACLRVICLHHACLIEDGWKHFDSMIHNYDTTPEVVHYACMVDLLGRRGL 81
           P  ++   +L AC       H+CL+E+G +HFDSM  +Y   P V HY CMVDLLGR GL
Sbjct: 421 PTDVTFIGVLMAC------SHSCLVEEGRRHFDSMARDYGIKPRVEHYGCMVDLLGRAGL 474

Query: 80  LDEAAKFIDSMPIEPDASVWRALFGA 3
           +DEA +FI +MPIEP+A +WRAL  +
Sbjct: 475 VDEAYQFIRTMPIEPNAVIWRALLSS 500


>ref|XP_003637737.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355503672|gb|AES84875.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 561

 Score = 93.2 bits (230), Expect = 2e-17
 Identities = 42/86 (48%), Positives = 60/86 (69%)
 Frame = -1

Query: 260 PVPISIKTMLSACLRVICLHHACLIEDGWKHFDSMIHNYDTTPEVVHYACMVDLLGRRGL 81
           P  I+   +LSAC       ++ L+++GWK+FDSM  +Y+  P + HY CMVDLLG+ G 
Sbjct: 288 PDAITFTALLSAC------KNSGLVDEGWKYFDSMQEDYNIVPTIEHYCCMVDLLGKSGF 341

Query: 80  LDEAAKFIDSMPIEPDASVWRALFGA 3
           LDEA+ FI++MPI+PDAS+W AL  +
Sbjct: 342 LDEASHFIETMPIKPDASIWGALLAS 367


>ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 44/86 (51%), Positives = 56/86 (65%)
 Frame = -1

Query: 260 PVPISIKTMLSACLRVICLHHACLIEDGWKHFDSMIHNYDTTPEVVHYACMVDLLGRRGL 81
           P  ++   +L AC       H CL+E+G +HF SM  +Y   P + HY CMVDLLGR GL
Sbjct: 472 PTDVTFIGVLLAC------SHGCLVEEGRRHFTSMTQDYGICPRIEHYGCMVDLLGRAGL 525

Query: 80  LDEAAKFIDSMPIEPDASVWRALFGA 3
           +DEA +FI +MPIEP+A VWRAL  A
Sbjct: 526 IDEAYQFIRNMPIEPNAVVWRALLSA 551


>ref|XP_002282803.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g40720-like [Vitis vinifera]
          Length = 854

 Score = 92.0 bits (227), Expect = 4e-17
 Identities = 45/86 (52%), Positives = 61/86 (70%)
 Frame = -1

Query: 260 PVPISIKTMLSACLRVICLHHACLIEDGWKHFDSMIHNYDTTPEVVHYACMVDLLGRRGL 81
           P  ++  ++LSAC       H+  IE G + F SM+ +++ TPE+VHY+C+VDLL R G 
Sbjct: 659 PNGVTFVSVLSAC------SHSGFIEMGLQLFHSMVQDFNVTPELVHYSCIVDLLARGGC 712

Query: 80  LDEAAKFIDSMPIEPDASVWRALFGA 3
           +DEA +FIDSMPIEPDASVWRAL  +
Sbjct: 713 IDEAREFIDSMPIEPDASVWRALLSS 738


>emb|CAN74403.1| hypothetical protein VITISV_043633 [Vitis vinifera]
          Length = 841

 Score = 92.0 bits (227), Expect = 4e-17
 Identities = 45/86 (52%), Positives = 61/86 (70%)
 Frame = -1

Query: 260 PVPISIKTMLSACLRVICLHHACLIEDGWKHFDSMIHNYDTTPEVVHYACMVDLLGRRGL 81
           P  ++  ++LSAC       H+  IE G + F SM+ +++ TPE+VHY+C+VDLL R G 
Sbjct: 646 PNGVTFVSVLSAC------SHSGFIEMGLQLFHSMVQDFNVTPELVHYSCIVDLLARGGC 699

Query: 80  LDEAAKFIDSMPIEPDASVWRALFGA 3
           +DEA +FIDSMPIEPDASVWRAL  +
Sbjct: 700 IDEAREFIDSMPIEPDASVWRALLSS 725