BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00034702
         (280 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containi...    97   2e-18
ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containi...    96   3e-18
ref|XP_002512521.1| pentatricopeptide repeat-containing protein,...    95   7e-18
ref|XP_002330082.1| predicted protein [Populus trichocarpa] gi|2...    89   3e-16
emb|CBI39605.3| unnamed protein product [Vitis vinifera]               80   2e-13

>ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score = 96.7 bits (239), Expect = 2e-18
 Identities = 44/93 (47%), Positives = 66/93 (70%), Gaps = 1/93 (1%)
 Frame = -1

Query: 277 KASDLSPQTTTPTARLSQQTISNLLDSKGTKSLQHLKQIHTLIIRYGLFQDNYIAGSLVK 98
           K  D S +   PT++L Q+T+  L DSK   SLQ+L Q+H L++R G FQD+Y++G+L+K
Sbjct: 14  KPVDFSAEKNIPTSKLPQKTVLKLFDSKSITSLQYLTQLHALVLRSGHFQDHYVSGALLK 73

Query: 97  CY-SIHFNSLDTALKAFNHVPRRHVFLWNSMIK 2
           CY + HF++ D ALK F+ +P  +VF+WN +IK
Sbjct: 74  CYANPHFSNFDFALKVFSSIPNPNVFIWNIVIK 106


>ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score = 95.9 bits (237), Expect = 3e-18
 Identities = 44/93 (47%), Positives = 66/93 (70%), Gaps = 1/93 (1%)
 Frame = -1

Query: 277 KASDLSPQTTTPTARLSQQTISNLLDSKGTKSLQHLKQIHTLIIRYGLFQDNYIAGSLVK 98
           K  D S +   PT++L Q+T+  L DSK   SLQ+L Q+H L++R G FQD+Y++G+L+K
Sbjct: 14  KPVDFSAEKNIPTSKLPQKTVLKLFDSKSITSLQYLTQLHGLVLRSGHFQDHYVSGALLK 73

Query: 97  CY-SIHFNSLDTALKAFNHVPRRHVFLWNSMIK 2
           CY + HF++ D ALK F+ +P  +VF+WN +IK
Sbjct: 74  CYANPHFSNFDFALKVFSSIPNPNVFIWNIVIK 106


>ref|XP_002512521.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548482|gb|EEF49973.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 422

 Score = 94.7 bits (234), Expect = 7e-18
 Identities = 44/89 (49%), Positives = 68/89 (76%), Gaps = 1/89 (1%)
 Frame = -1

Query: 265 LSPQTTTPTARLSQQTISNLLDSKGTKSLQHLKQIHTLIIRYGLFQDNYIAGSLVKCY-S 89
           LSP    PT++L+Q+TI +LL+SK   S Q+LKQIH +I+R G F+D+Y++G+L+KCY +
Sbjct: 14  LSPAENKPTSKLTQKTILDLLNSKCNASFQYLKQIHAVILRSGHFEDHYVSGTLLKCYAN 73

Query: 88  IHFNSLDTALKAFNHVPRRHVFLWNSMIK 2
            HF ++D A   F+HVP+ +VF++N +IK
Sbjct: 74  PHFKNIDLAFTVFDHVPKPNVFVYNIIIK 102


>ref|XP_002330082.1| predicted protein [Populus trichocarpa] gi|222871507|gb|EEF08638.1|
           predicted protein [Populus trichocarpa]
          Length = 665

 Score = 89.4 bits (220), Expect = 3e-16
 Identities = 42/81 (51%), Positives = 65/81 (80%), Gaps = 1/81 (1%)
 Frame = -1

Query: 241 TARLSQQTISNLLDSKGTKSLQHLKQIHTLIIRYGLFQDNYIAGSLVKCY-SIHFNSLDT 65
           T++LSQ+TI +LL++K + SL HLKQ+H + +R G FQD+Y++G+LVKCY + HF++L+ 
Sbjct: 23  TSQLSQKTILDLLNTKSSTSLHHLKQVHAVALRTGHFQDHYVSGTLVKCYANPHFSNLNF 82

Query: 64  ALKAFNHVPRRHVFLWNSMIK 2
           ALK F +VP  +VF++N +IK
Sbjct: 83  ALKVFEYVPNPNVFVFNIIIK 103


>emb|CBI39605.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score = 80.1 bits (196), Expect = 2e-13
 Identities = 42/87 (48%), Positives = 61/87 (70%), Gaps = 4/87 (4%)
 Frame = -1

Query: 250 TTPTARLSQQTISNLLDSKGTKSLQHLKQIHTLIIRYGLFQDNYIAGSLVKCY----SIH 83
           +T T++LS + I +LL+++ T SL HLKQ H LI+R G  QD+YIAGSLVK Y    +  
Sbjct: 45  STETSKLSHKAILHLLNTQCTTSLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNR 104

Query: 82  FNSLDTALKAFNHVPRRHVFLWNSMIK 2
           + S +++L+ F+ V + +VFLWN MIK
Sbjct: 105 YLSFESSLRVFDFVRKPNVFLWNCMIK 131