BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00034685
         (372 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAA36616.1| unnamed protein product [Solanum tuberosum]           169   3e-40
gb|ABA95799.2| retrotransposon protein, putative, unclassified, ...   167   1e-39
gb|AAP46207.1| putative retrotransposon protein [Oryza sativa Ja...   167   1e-39
emb|CAD41085.2| OSJNBb0011N17.2 [Oryza sativa Japonica Group]         167   1e-39
gb|AAL68641.1|AF458765_1 polyprotein [Oryza sativa Japonica Group]    164   7e-39

>emb|CAA36616.1| unnamed protein product [Solanum tuberosum]
          Length = 390

 Score =  169 bits (427), Expect = 3e-40
 Identities = 86/121 (71%), Positives = 97/121 (80%)
 Frame = +3

Query: 9   LTDIGQYQRLVGKLIYLTITRPDISYAVSLVSRFMHAPRTPHMNAVSRILQYLKGSPGRG 188
           L D GQYQRLVGKLIYL+ TRPDIS+AVSLV +FMH PR  H  AV RIL+YLK SPG+G
Sbjct: 172 LIDKGQYQRLVGKLIYLSHTRPDISFAVSLVIQFMHYPREEHQEAVYRILRYLKSSPGKG 231

Query: 189 IWMRKNWHTSITAYTYADWAGCPVDRRSASGYYTFVGGNLVT*KSKKHNVVARSSAEAEY 368
           ++ +KN   S+ AYT ADWAG  +DRRS SGY TFV GNLVT +SKK NVVARSSAEAEY
Sbjct: 232 LFFKKNEQRSLEAYTDADWAGSSIDRRSTSGYCTFVWGNLVTWRSKKQNVVARSSAEAEY 291

Query: 369 R 371
           R
Sbjct: 292 R 292


>gb|ABA95799.2| retrotransposon protein, putative, unclassified, expressed [Oryza
            sativa Japonica Group]
          Length = 2156

 Score =  167 bits (422), Expect = 1e-39
 Identities = 79/116 (68%), Positives = 95/116 (81%)
 Frame = +3

Query: 24   QYQRLVGKLIYLTITRPDISYAVSLVSRFMHAPRTPHMNAVSRILQYLKGSPGRGIWMRK 203
            +YQRLVG+LIYL  TRPDI+YAVS+VSR+MH PR+ HM+AV RIL+YLKGSPG+G+W +K
Sbjct: 1375 RYQRLVGRLIYLCHTRPDITYAVSMVSRYMHDPRSGHMDAVYRILRYLKGSPGKGLWFKK 1434

Query: 204  NWHTSITAYTYADWAGCPVDRRSASGYYTFVGGNLVT*KSKKHNVVARSSAEAEYR 371
            N H  +  Y  ADWA CP DRRS SGY  FVGGNLV+ +SKK  VV+RS+AEAEYR
Sbjct: 1435 NGHLEVEGYCDADWASCPDDRRSTSGYCVFVGGNLVSWRSKKQPVVSRSTAEAEYR 1490


>gb|AAP46207.1| putative retrotransposon protein [Oryza sativa Japonica Group]
          Length = 1176

 Score =  167 bits (422), Expect = 1e-39
 Identities = 79/116 (68%), Positives = 95/116 (81%)
 Frame = +3

Query: 24   QYQRLVGKLIYLTITRPDISYAVSLVSRFMHAPRTPHMNAVSRILQYLKGSPGRGIWMRK 203
            +YQRLVG+LIYL  TRPDI+YAVS+VSR+MH PR+ HM+AV RIL+YLKGSPG+G+W +K
Sbjct: 953  RYQRLVGRLIYLCHTRPDITYAVSMVSRYMHDPRSGHMDAVYRILRYLKGSPGKGLWFKK 1012

Query: 204  NWHTSITAYTYADWAGCPVDRRSASGYYTFVGGNLVT*KSKKHNVVARSSAEAEYR 371
            N H  +  Y  ADWA CP DRRS SGY  FVGGNLV+ +SKK  VV+RS+AEAEYR
Sbjct: 1013 NGHLEVEGYCDADWASCPDDRRSTSGYCVFVGGNLVSWRSKKQPVVSRSTAEAEYR 1068


>emb|CAD41085.2| OSJNBb0011N17.2 [Oryza sativa Japonica Group]
          Length = 1262

 Score =  167 bits (422), Expect = 1e-39
 Identities = 79/116 (68%), Positives = 95/116 (81%)
 Frame = +3

Query: 24   QYQRLVGKLIYLTITRPDISYAVSLVSRFMHAPRTPHMNAVSRILQYLKGSPGRGIWMRK 203
            +YQRLVG+LIYL  TRPDI+YAVS+VSR+MH PR+ HM+AV RIL+YLKGSPG+G+W +K
Sbjct: 1039 RYQRLVGRLIYLCHTRPDITYAVSMVSRYMHDPRSGHMDAVYRILRYLKGSPGKGLWFKK 1098

Query: 204  NWHTSITAYTYADWAGCPVDRRSASGYYTFVGGNLVT*KSKKHNVVARSSAEAEYR 371
            N H  +  Y  ADWA CP DRRS SGY  FVGGNLV+ +SKK  VV+RS+AEAEYR
Sbjct: 1099 NGHLEVEGYCDADWASCPDDRRSTSGYCVFVGGNLVSWRSKKQPVVSRSTAEAEYR 1154


>gb|AAL68641.1|AF458765_1 polyprotein [Oryza sativa Japonica Group]
          Length = 1472

 Score =  164 bits (415), Expect = 7e-39
 Identities = 78/116 (67%), Positives = 94/116 (81%)
 Frame = +3

Query: 24   QYQRLVGKLIYLTITRPDISYAVSLVSRFMHAPRTPHMNAVSRILQYLKGSPGRGIWMRK 203
            +YQRLVG+LIYL  TRPDI+YAVS+VSR+MH PR+ HM+AV RIL+YLKGSPG+G+W +K
Sbjct: 1249 RYQRLVGRLIYLCHTRPDITYAVSMVSRYMHDPRSGHMDAVYRILRYLKGSPGKGLWFKK 1308

Query: 204  NWHTSITAYTYADWAGCPVDRRSASGYYTFVGGNLVT*KSKKHNVVARSSAEAEYR 371
            N H  +  Y  A WA CP DRRS SGY  FVGGNLV+ +SKK  VV+RS+AEAEYR
Sbjct: 1309 NGHLEVEGYCDAHWASCPDDRRSTSGYCVFVGGNLVSWRSKKQPVVSRSTAEAEYR 1364