BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00034627
         (400 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containi...   213   1e-53
ref|XP_002512534.1| pentatricopeptide repeat-containing protein,...   205   3e-51
ref|XP_002330073.1| predicted protein [Populus trichocarpa] gi|2...   198   3e-49
ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containi...   194   6e-48
ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containi...   194   6e-48

>ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  213 bits (543), Expect = 1e-53
 Identities = 102/131 (77%), Positives = 117/131 (89%)
 Frame = -3

Query: 398 AMIVVYAQHDNSSETLSVFHEMQLQGIRPDETMLVSVISACTHLAALEQGKWIHAYIKKS 219
           A+I  YAQHD  SETL++FHEMQL  IRPDET+LVSVISACTHLAAL+QGKW+HAYI+K+
Sbjct: 406 AVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAALDQGKWVHAYIRKN 465

Query: 218 NLKINTILGTTLIDMYMKCGCVENALEIFQGLEDKGVSSWNAVILGLAVNGLVEESLDKF 39
            LK+N ILGTTL+DMYMKCGCVENALE+F G+E+KGVSSWNA+I+GLAVNGLVE SLD F
Sbjct: 466 GLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMF 525

Query: 38  SEMKRCGVAPN 6
           SEMK  GV PN
Sbjct: 526 SEMKNNGVIPN 536



 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 52/162 (32%), Positives = 76/162 (46%), Gaps = 31/162 (19%)
 Frame = -3

Query: 398 AMIVVYAQHDNSSETLSVFHEMQLQGIRPDETMLVSVISACTHLAALEQGKWIHAYIKKS 219
           A+I  Y Q+    E L +F EM   G+R DE ++VSV+SAC HL+ ++ GK IH  + + 
Sbjct: 274 ALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRM 333

Query: 218 NLKINTILGTTLIDMY-------------------------------MKCGCVENALEIF 132
            ++    L   LI MY                               MKCG VE A  +F
Sbjct: 334 GIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALF 393

Query: 131 QGLEDKGVSSWNAVILGLAVNGLVEESLDKFSEMKRCGVAPN 6
             + +K + SW+AVI G A +    E+L  F EM+   + P+
Sbjct: 394 DVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPD 435



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 34/122 (27%), Positives = 57/122 (46%)
 Frame = -3

Query: 395 MIVVYAQHDNSSETLSVFHEMQLQGIRPDETMLVSVISACTHLAALEQGKWIHAYIKKSN 216
           M+  Y Q +++ + L ++  M    + PD      V+ AC        GK IH ++ K  
Sbjct: 112 MMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHVLKVG 171

Query: 215 LKINTILGTTLIDMYMKCGCVENALEIFQGLEDKGVSSWNAVILGLAVNGLVEESLDKFS 36
              +  +  TLI+MY  CG + +A ++F         SWN+++ G    G VEE+   F 
Sbjct: 172 FDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEAKLIFD 231

Query: 35  EM 30
           +M
Sbjct: 232 QM 233


>ref|XP_002512534.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548495|gb|EEF49986.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 444

 Score =  205 bits (522), Expect = 3e-51
 Identities = 97/131 (74%), Positives = 114/131 (87%)
 Frame = -3

Query: 398 AMIVVYAQHDNSSETLSVFHEMQLQGIRPDETMLVSVISACTHLAALEQGKWIHAYIKKS 219
           AMI  YAQHD  +ETL++F EMQL G++PDET LVSV+SACTHLAAL+QGKWIH Y++K+
Sbjct: 261 AMISGYAQHDRFAETLALFQEMQLDGVKPDETTLVSVVSACTHLAALDQGKWIHLYLRKN 320

Query: 218 NLKINTILGTTLIDMYMKCGCVENALEIFQGLEDKGVSSWNAVILGLAVNGLVEESLDKF 39
            LKIN ILGTTLIDMYMK GCVE+ALE+F G+++KGVS+WNAVILGLA+NGLV  SLD F
Sbjct: 321 GLKINVILGTTLIDMYMKFGCVEDALEVFHGMKEKGVSTWNAVILGLALNGLVHMSLDTF 380

Query: 38  SEMKRCGVAPN 6
           SEMK CGV PN
Sbjct: 381 SEMKDCGVVPN 391



 Score = 79.0 bits (193), Expect = 4e-13
 Identities = 52/162 (32%), Positives = 75/162 (46%), Gaps = 31/162 (19%)
 Frame = -3

Query: 398 AMIVVYAQHDNSSETLSVFHEMQLQGIRPDETMLVSVISACTHLAALEQGKWIHAYIKKS 219
           A+I  Y Q+    E L  F +M   GI  DE ++VSV+SAC HL A++ GK +H+   K 
Sbjct: 129 ALISGYEQNGRYEEALVTFGKMNAYGIMVDEVVVVSVLSACAHLFAVKTGKLVHSLAVKI 188

Query: 218 NLKINTILGTTLIDMY-------------------------------MKCGCVENALEIF 132
            ++    L   LI MY                               +KCG +E A  +F
Sbjct: 189 GIESYVNLQNALIHMYSSCREIDSAQKLFNVGYSLDQISWNSMISGYLKCGEIEKAKALF 248

Query: 131 QGLEDKGVSSWNAVILGLAVNGLVEESLDKFSEMKRCGVAPN 6
             + DK + SW+A+I G A +    E+L  F EM+  GV P+
Sbjct: 249 DIMNDKDLVSWSAMISGYAQHDRFAETLALFQEMQLDGVKPD 290


>ref|XP_002330073.1| predicted protein [Populus trichocarpa] gi|222871498|gb|EEF08629.1|
           predicted protein [Populus trichocarpa]
          Length = 793

 Score =  198 bits (504), Expect = 3e-49
 Identities = 96/131 (73%), Positives = 115/131 (87%)
 Frame = -3

Query: 398 AMIVVYAQHDNSSETLSVFHEMQLQGIRPDETMLVSVISACTHLAALEQGKWIHAYIKKS 219
           AMI  YAQ D  +ETL +F EMQ++G +PDET+LVSVISACTHLAAL+QGKWIHAYI+K+
Sbjct: 391 AMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQGKWIHAYIRKN 450

Query: 218 NLKINTILGTTLIDMYMKCGCVENALEIFQGLEDKGVSSWNAVILGLAVNGLVEESLDKF 39
            LKIN ILGTTLI+MYMK GCVE+ALE+F+GLE+KGVS+WNA+ILGLA+NGLV++SL  F
Sbjct: 451 GLKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTF 510

Query: 38  SEMKRCGVAPN 6
           SEMK  GV PN
Sbjct: 511 SEMKEHGVTPN 521



 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 49/162 (30%), Positives = 72/162 (44%), Gaps = 31/162 (19%)
 Frame = -3

Query: 398 AMIVVYAQHDNSSETLSVFHEMQLQGIRPDETMLVSVISACTHLAALEQGKWIHAYIKKS 219
           A+I  Y Q++   E L +F EM   GI  DE +++SV+SAC+ L  +  GK +H  + K 
Sbjct: 259 ALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKV 318

Query: 218 NLKINTILGTTLIDMY-------------------------------MKCGCVENALEIF 132
            ++    L   LI MY                               +KCG +E A  +F
Sbjct: 319 GIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALF 378

Query: 131 QGLEDKGVSSWNAVILGLAVNGLVEESLDKFSEMKRCGVAPN 6
             + DK   SW+A+I G A      E+L  F EM+  G  P+
Sbjct: 379 DSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPD 420



 Score = 55.8 bits (133), Expect = 4e-06
 Identities = 32/122 (26%), Positives = 58/122 (47%)
 Frame = -3

Query: 395 MIVVYAQHDNSSETLSVFHEMQLQGIRPDETMLVSVISACTHLAALEQGKWIHAYIKKSN 216
           M+  Y Q ++  + + V+  M    +  D      +  +C+   A   GK I  ++ K  
Sbjct: 97  MMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQSCSIRLAEFDGKCIQDHVLKVG 156

Query: 215 LKINTILGTTLIDMYMKCGCVENALEIFQGLEDKGVSSWNAVILGLAVNGLVEESLDKFS 36
              +  +  TLI+MY  CG + +A ++F G     + SWN+++ G  + G VEE+ D + 
Sbjct: 157 FDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEAKDVYD 216

Query: 35  EM 30
            M
Sbjct: 217 RM 218


>ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  194 bits (493), Expect = 6e-48
 Identities = 92/131 (70%), Positives = 109/131 (83%)
 Frame = -3

Query: 398 AMIVVYAQHDNSSETLSVFHEMQLQGIRPDETMLVSVISACTHLAALEQGKWIHAYIKKS 219
           +MI  YAQ+D   ETL++F EMQ+ G +PDET LVSVISAC  LAALEQGKW+HAYIK++
Sbjct: 478 SMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRN 537

Query: 218 NLKINTILGTTLIDMYMKCGCVENALEIFQGLEDKGVSSWNAVILGLAVNGLVEESLDKF 39
            L IN ILGTTLIDMYMKCGCVE ALE+F G+ +KG+S+WNA+ILGLA+NGLVE SLD F
Sbjct: 538 GLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMF 597

Query: 38  SEMKRCGVAPN 6
           S MK+C V PN
Sbjct: 598 SNMKKCHVTPN 608



 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 49/162 (30%), Positives = 74/162 (45%), Gaps = 31/162 (19%)
 Frame = -3

Query: 398 AMIVVYAQHDNSSETLSVFHEMQLQGIRPDETMLVSVISACTHLAALEQGKWIHA----- 234
           A+I  + Q++   E +  F  M   G+  DE + VS +SAC +L  +  GK IH+     
Sbjct: 346 ALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKI 405

Query: 233 ----YIKKSNLKI----------------------NTILGTTLIDMYMKCGCVENALEIF 132
               YI   N  I                      + I   ++I  Y+KC  V+NA  IF
Sbjct: 406 GTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIF 465

Query: 131 QGLEDKGVSSWNAVILGLAVNGLVEESLDKFSEMKRCGVAPN 6
             + +K V SW+++I G A N L +E+L  F EM+  G  P+
Sbjct: 466 DSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPD 507


>ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  194 bits (493), Expect = 6e-48
 Identities = 92/131 (70%), Positives = 109/131 (83%)
 Frame = -3

Query: 398 AMIVVYAQHDNSSETLSVFHEMQLQGIRPDETMLVSVISACTHLAALEQGKWIHAYIKKS 219
           +MI  YAQ+D   ETL++F EMQ+ G +PDET LVSVISAC  LAALEQGKW+HAYIK++
Sbjct: 343 SMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRN 402

Query: 218 NLKINTILGTTLIDMYMKCGCVENALEIFQGLEDKGVSSWNAVILGLAVNGLVEESLDKF 39
            L IN ILGTTLIDMYMKCGCVE ALE+F G+ +KG+S+WNA+ILGLA+NGLVE SLD F
Sbjct: 403 GLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMF 462

Query: 38  SEMKRCGVAPN 6
           S MK+C V PN
Sbjct: 463 SNMKKCHVTPN 473



 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 49/162 (30%), Positives = 74/162 (45%), Gaps = 31/162 (19%)
 Frame = -3

Query: 398 AMIVVYAQHDNSSETLSVFHEMQLQGIRPDETMLVSVISACTHLAALEQGKWIHA----- 234
           A+I  + Q++   E +  F  M   G+  DE + VS +SAC +L  +  GK IH+     
Sbjct: 211 ALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKI 270

Query: 233 ----YIKKSNLKI----------------------NTILGTTLIDMYMKCGCVENALEIF 132
               YI   N  I                      + I   ++I  Y+KC  V+NA  IF
Sbjct: 271 GTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIF 330

Query: 131 QGLEDKGVSSWNAVILGLAVNGLVEESLDKFSEMKRCGVAPN 6
             + +K V SW+++I G A N L +E+L  F EM+  G  P+
Sbjct: 331 DSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPD 372