BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00034471
         (320 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN77449.1| hypothetical protein VITISV_016970 [Vitis vinifera]    60   4e-12
gb|ADK92871.1| retrotransposon protein [Hypericum perforatum]          75   7e-12
gb|ABN05720.1| RNA-directed DNA polymerase (Reverse transcriptas...    67   8e-12
dbj|BAB01814.1| unnamed protein product [Arabidopsis thaliana]         74   1e-11
ref|XP_002454941.1| hypothetical protein SORBIDRAFT_03g001780 [S...    59   1e-11

>emb|CAN77449.1| hypothetical protein VITISV_016970 [Vitis vinifera]
          Length = 517

 Score = 60.5 bits (145), Expect(2) = 4e-12
 Identities = 28/77 (36%), Positives = 42/77 (54%)
 Frame = +2

Query: 86  AIPSYLMLIFDVPATTYSKLDSMNANFFWGQNKNNANKTHFICWNKVCQPKS*GGLGIRL 265
           AIPSY M  F +P +   +L  M  +F+WG   +   + +++ W+K+C  K  GGLG R 
Sbjct: 200 AIPSYCMSTFLLPISLSEELQKMMNSFWWGPKSDGGRRINWLSWDKLCLRKEEGGLGFRN 259

Query: 266 ASNHNTTLLAKLFWRLI 316
             + N  +L K  W LI
Sbjct: 260 LRDFNLAMLGKQGWNLI 276



 Score = 35.4 bits (80), Expect(2) = 4e-12
 Identities = 15/26 (57%), Positives = 22/26 (84%)
 Frame = +1

Query: 1   RVFQRMEGWKVKILSQAGKVTLIKSV 78
           R+++R++GW+ K+LSQAGK  LIK V
Sbjct: 172 RLWRRLQGWQSKLLSQAGKKILIKVV 197


>gb|ADK92871.1| retrotransposon protein [Hypericum perforatum]
          Length = 593

 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 38/103 (36%), Positives = 57/103 (55%)
 Frame = +2

Query: 8   FKGWKVGKLRFSPRQEKSLSSNQSLPAIPSYLMLIFDVPATTYSKLDSMNANFFWGQNKN 187
           F  WKV  L    R  + +     L +I +Y+M  F++P  T  +++ M  NF+WG ++N
Sbjct: 16  FGSWKVRTLS---RAGREIMIKSVLQSISTYIMGCFELPEGTCDRIEKMMCNFYWGGDRN 72

Query: 188 NANKTHFICWNKVCQPKS*GGLGIRLASNHNTTLLAKLFWRLI 316
            + K H+  W K+C+ K  GGLG R   N N  +LAK  WRL+
Sbjct: 73  GS-KMHWRSWEKLCRSKRNGGLGFRRLKNFNRAMLAKQGWRLL 114


>gb|ABN05720.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 391

 Score = 66.6 bits (161), Expect(2) = 8e-12
 Identities = 32/79 (40%), Positives = 46/79 (58%)
 Frame = +2

Query: 80  LPAIPSYLMLIFDVPATTYSKLDSMNANFFWGQNKNNANKTHFICWNKVCQPKS*GGLGI 259
           L A+P Y +  F  PA T S +DS+ + FFWG +++   K  ++ W +VC+ K  GGLG+
Sbjct: 205 LSALPVYALSFFKAPAGTISSIDSILSKFFWGGSED-LRKISWVGWQRVCKRKEYGGLGV 263

Query: 260 RLASNHNTTLLAKLFWRLI 316
           R     N  LL K  WRL+
Sbjct: 264 RRLREFNEALLGKWCWRLL 282



 Score = 28.1 bits (61), Expect(2) = 8e-12
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 1   RVFQRMEGWKVKILSQAGKVTLIKSVTSS 87
           R+  R+  W+ + LS  G++ L+KSV S+
Sbjct: 179 RIKSRLSSWQSRFLSFGGRLILVKSVLSA 207


>dbj|BAB01814.1| unnamed protein product [Arabidopsis thaliana]
          Length = 170

 Score = 74.3 bits (181), Expect = 1e-11
 Identities = 40/101 (39%), Positives = 53/101 (52%)
 Frame = +2

Query: 14  GWKVGKLRFSPRQEKSLSSNQSLPAIPSYLMLIFDVPATTYSKLDSMNANFFWGQNKNNA 193
           GW     +F  +  K +       A+P+Y+M  F +P T  SKL S    F+W  N   +
Sbjct: 32  GWSA---KFLSKGGKEVMIKLVATALPTYVMSCFTLPKTITSKLTSAIPKFWWSSN-GES 87

Query: 194 NKTHFICWNKVCQPKS*GGLGIRLASNHNTTLLAKLFWRLI 316
              H++ W+KVC  KS GGLG R   N N+ LLAK  WRLI
Sbjct: 88  RGMHWMAWDKVCYSKSEGGLGFRSVDNFNSALLAKQLWRLI 128


>ref|XP_002454941.1| hypothetical protein SORBIDRAFT_03g001780 [Sorghum bicolor]
           gi|241926916|gb|EES00061.1| hypothetical protein
           SORBIDRAFT_03g001780 [Sorghum bicolor]
          Length = 631

 Score = 58.5 bits (140), Expect(2) = 1e-11
 Identities = 29/77 (37%), Positives = 44/77 (57%)
 Frame = +2

Query: 86  AIPSYLMLIFDVPATTYSKLDSMNANFFWGQNKNNANKTHFICWNKVCQPKS*GGLGIRL 265
           +IP+Y M  FD+      +L S+   ++W Q ++ ANK H+I W K+ Q K  GGLG R 
Sbjct: 380 SIPTYAMSCFDLTKGLCDELSSIIGRYWWSQ-QDKANKIHWISWEKLTQSKEKGGLGFRD 438

Query: 266 ASNHNTTLLAKLFWRLI 316
               N  +L++  WRL+
Sbjct: 439 LHLFNLAMLSRQAWRLL 455



 Score = 35.4 bits (80), Expect(2) = 1e-11
 Identities = 14/29 (48%), Positives = 23/29 (79%)
 Frame = +1

Query: 1   RVFQRMEGWKVKILSQAGKVTLIKSVTSS 87
           +++ R++GW+ K+LS+AGK  LIK+V  S
Sbjct: 352 KIWSRIQGWQEKLLSKAGKEILIKAVAQS 380