BLASTX nr result
ID: Coptis24_contig00033995
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00033995
(445 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003540559.1| PREDICTED: pentatricopeptide repeat-containi... 80 1e-21
gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygr... 75 2e-21
ref|XP_001754449.1| predicted protein [Physcomitrella patens sub... 76 4e-21
ref|XP_004144696.1| PREDICTED: pentatricopeptide repeat-containi... 85 8e-21
ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containi... 80 2e-20
>ref|XP_003540559.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
mitochondrial-like [Glycine max]
Length = 916
Score = 79.7 bits (195), Expect(2) = 1e-21
Identities = 41/101 (40%), Positives = 62/101 (61%), Gaps = 14/101 (13%)
Frame = +2
Query: 173 VFEQMSKK----DVVTWTSIID-----GYVDDNRSTI*-----FGIRPTIQHYGCMVDLL 310
VF++M++ D VT+ ++ G+V + R +GI P + HY CMVDLL
Sbjct: 711 VFDEMTQSCITPDDVTFLGVLTACSHAGWVYEGRQIFDVMVNYYGIEPRVDHYACMVDLL 770
Query: 311 ARVGHLKEAELFIKRMPIEPDSVVWRNLIWACKMHGDHYRG 433
R G LKEAE FI ++ +EP++++W NL+ AC++HGD RG
Sbjct: 771 GRWGFLKEAEEFIDKLEVEPNAMIWANLLGACRIHGDEKRG 811
Score = 48.5 bits (114), Expect(2) = 1e-21
Identities = 18/59 (30%), Positives = 36/59 (61%)
Frame = +1
Query: 1 DKFTYPFILKSCGCLSKVDEGKQFHALVYKTGLQSDRYIQNSLIHMYCYCGESDCATRV 177
D+ T+ +L++C LS + +G++ H+L++ TG D ++L+ MY CG+ + +V
Sbjct: 621 DQATFVTVLQACALLSSLHDGREIHSLIFHTGFDLDELTSSALVDMYAKCGDVKSSVQV 679
>gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
Length = 890
Score = 75.1 bits (183), Expect(2) = 2e-21
Identities = 43/95 (45%), Positives = 57/95 (60%), Gaps = 14/95 (14%)
Frame = +2
Query: 173 VFEQMSKKDV----VTWTSIID-----GYVDDNRSTI*-----FGIRPTIQHYGCMVDLL 310
+F++M K+ V +T+T++I G V + R F ++P QHYGCMVDLL
Sbjct: 606 LFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQEDFRMKPGKQHYGCMVDLL 665
Query: 311 ARVGHLKEAELFIKRMPIEPDSVVWRNLIWACKMH 415
R G L+EAE FI+RMP EPD VW L+ ACK H
Sbjct: 666 GRAGRLQEAEEFIQRMPCEPDISVWHALLGACKSH 700
Score = 52.0 bits (123), Expect(2) = 2e-21
Identities = 28/66 (42%), Positives = 36/66 (54%)
Frame = +1
Query: 1 DKFTYPFILKSCGCLSKVDEGKQFHALVYKTGLQSDRYIQNSLIHMYCYCGESDCATRV* 180
D+ T IL++CG LS ++ GK HA K GL+SD + SLI MY CGE A V
Sbjct: 517 DRVTIISILEACGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVF 576
Query: 181 ANVEER 198
+ R
Sbjct: 577 DKISNR 582
Score = 51.2 bits (121), Expect(2) = 6e-07
Identities = 23/66 (34%), Positives = 40/66 (60%)
Frame = +1
Query: 1 DKFTYPFILKSCGCLSKVDEGKQFHALVYKTGLQSDRYIQNSLIHMYCYCGESDCATRV* 180
+K T+ ILK+C +++G+Q HA + K G +SDR +Q ++ +MY CG A +V
Sbjct: 385 NKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVF 444
Query: 181 ANVEER 198
+ +E +
Sbjct: 445 SKMENK 450
Score = 40.8 bits (94), Expect(2) = 6e-07
Identities = 16/47 (34%), Positives = 29/47 (61%)
Frame = +1
Query: 10 TYPFILKSCGCLSKVDEGKQFHALVYKTGLQSDRYIQNSLIHMYCYC 150
T+ +L SC ++ G++ H+ + + GL++D + N+LI MYC C
Sbjct: 282 TFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKC 328
Score = 37.4 bits (85), Expect(2) = 6e-07
Identities = 23/87 (26%), Positives = 41/87 (47%)
Frame = +2
Query: 158 QIVRHVFEQMSKKDVVTWTSIIDGYVDDNRSTI*FGIRPTIQHYGCMVDLLARVGHLKEA 337
Q R F++MSK+DV++W+++I GY + L V L E
Sbjct: 332 QDARETFDRMSKRDVISWSAMIAGYAQSGYQD---------------KESLDEVFQLLER 376
Query: 338 ELFIKRMPIEPDSVVWRNLIWACKMHG 418
++R + P+ V + +++ AC +HG
Sbjct: 377 ---MRREGVFPNKVTFMSILKACSVHG 400
Score = 26.9 bits (58), Expect(2) = 6e-07
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 14/89 (15%)
Frame = +2
Query: 173 VFEQMSKKDVVTWTSIIDGYVDDNRSTI*FGIRPTIQHYGCMVDLLARV----------- 319
VF +MS ++VV+W +I GY F + +++ G D + +
Sbjct: 474 VFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSA 533
Query: 320 ---GHLKEAELFIKRMPIEPDSVVWRNLI 397
G L AE ++ +E D+VV +LI
Sbjct: 534 LERGKLVHAEAV--KLGLESDTVVATSLI 560
>ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694551|gb|EDQ80899.1| predicted protein
[Physcomitrella patens subsp. patens]
Length = 723
Score = 76.3 bits (186), Expect(2) = 4e-21
Identities = 42/101 (41%), Positives = 59/101 (58%), Gaps = 14/101 (13%)
Frame = +2
Query: 176 FEQMSKK----DVVTWTSIID-----GYVDDNRST-----I*FGIRPTIQHYGCMVDLLA 313
F+QM K+ D VT+TS++ G V++ R + +GI+P ++HY C VDLL
Sbjct: 440 FDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLG 499
Query: 314 RVGHLKEAELFIKRMPIEPDSVVWRNLIWACKMHGDHYRGD 436
R GHL+EAE I MP P VW L+ AC++H D RG+
Sbjct: 500 RAGHLEEAENVILSMPFIPGPSVWGALLSACRVHSDVERGE 540
Score = 50.1 bits (118), Expect(2) = 4e-21
Identities = 24/66 (36%), Positives = 36/66 (54%)
Frame = +1
Query: 1 DKFTYPFILKSCGCLSKVDEGKQFHALVYKTGLQSDRYIQNSLIHMYCYCGESDCATRV* 180
DK T+ +L SC + + EGK+ H + G D Y+Q++L+ MY CG D A+ V
Sbjct: 349 DKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVF 408
Query: 181 ANVEER 198
+ ER
Sbjct: 409 NQMSER 414
>ref|XP_004144696.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Cucumis sativus]
Length = 840
Score = 84.7 bits (208), Expect(2) = 8e-21
Identities = 39/98 (39%), Positives = 62/98 (63%), Gaps = 10/98 (10%)
Frame = +2
Query: 173 VFEQMSKKDVVTWTSIIDGY-----VDDNRSTI*-----FGIRPTIQHYGCMVDLLARVG 322
VF+ M ++V++WT+II GY V+ +S +GI+P HY CM+DLL R G
Sbjct: 495 VFDSMETRNVISWTAIIVGYAQNGLVETGQSYFESMEKVYGIKPASDHYACMIDLLGRAG 554
Query: 323 HLKEAELFIKRMPIEPDSVVWRNLIWACKMHGDHYRGD 436
+ EAE + RM +EPD+ +W++L+ AC++HG+ G+
Sbjct: 555 KINEAEHLLNRMDVEPDATIWKSLLSACRVHGNLELGE 592
Score = 40.4 bits (93), Expect(2) = 8e-21
Identities = 23/66 (34%), Positives = 35/66 (53%)
Frame = +1
Query: 1 DKFTYPFILKSCGCLSKVDEGKQFHALVYKTGLQSDRYIQNSLIHMYCYCGESDCATRV* 180
D+F + +C L+ ++ G+Q HA K+ S +NSLI MY CG + A RV
Sbjct: 437 DQFVVACVFSACAELTVIEFGRQVHANFIKSSAGSLLSAENSLITMYAKCGCLEDAIRVF 496
Query: 181 ANVEER 198
++E R
Sbjct: 497 DSMETR 502
>ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Vitis vinifera]
Length = 786
Score = 79.7 bits (195), Expect(2) = 2e-20
Identities = 38/105 (36%), Positives = 60/105 (57%), Gaps = 17/105 (16%)
Frame = +2
Query: 173 VFEQMSKKDVVTWTSIIDGYVDDNRSTI*-----------------FGIRPTIQHYGCMV 301
VF+ M +DV+TWT++I GY + R +GI+P +HY CM+
Sbjct: 499 VFDSMEIQDVITWTALIVGYAQNGRGRDHAGLVEHGRSYFQSMEEVYGIKPGPEHYACMI 558
Query: 302 DLLARVGHLKEAELFIKRMPIEPDSVVWRNLIWACKMHGDHYRGD 436
DLL R G L EA+ + +M ++PD+ VW+ L+ AC++HG+ G+
Sbjct: 559 DLLGRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGNVELGE 603
Score = 44.3 bits (103), Expect(2) = 2e-20
Identities = 23/64 (35%), Positives = 36/64 (56%)
Frame = +1
Query: 1 DKFTYPFILKSCGCLSKVDEGKQFHALVYKTGLQSDRYIQNSLIHMYCYCGESDCATRV* 180
D+ +L +C L+ ++ GKQ HA K+GL S + NSL+ MY CG + A +V
Sbjct: 441 DQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVF 500
Query: 181 ANVE 192
++E
Sbjct: 501 DSME 504