BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00033985
         (596 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI30318.3| unnamed protein product [Vitis vinifera]              318   4e-85
ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containi...   318   4e-85
emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]   317   1e-84
ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containi...   308   5e-82
ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containi...   284   9e-75

>emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  318 bits (815), Expect = 4e-85
 Identities = 148/198 (74%), Positives = 173/198 (87%)
 Frame = -2

Query: 595  NKITFVSLLYACSHAGLVDEGRQFFSSMWRDFNVKPDVKHYTCVVDLLGRAGKLDEAWEL 416
            NKIT VSLLYACSHAGLV+EG +FFS MW D++V+ DVKHYTCVVDLLGRAG+LDEA +L
Sbjct: 589  NKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKL 648

Query: 415  IDRMTVEKDEALWGALLGACRVHSNIGLAERAAESLLQMRPNNSGHFVLLSNIYAKAGRW 236
            I+ MTVEKDE LWGA LGACR H ++ LAE+AA SLL+++P N GH++LLSNIYA AGRW
Sbjct: 649  IESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRW 708

Query: 235  GDVAKMREIMTHRRLKKIPGWTWIEVDDKIHQFSVGDNSHPHSKKIYEMLRILSKKLEIV 56
             DVAK R++M+ RRLKKIPGWTWIEVD+K HQFSVGD +HP SK+IYEML+ L  KLE+V
Sbjct: 709  EDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELV 768

Query: 55   GYVPDTSFVLHDVDEELK 2
            GYVPDT+FVLHDVDEELK
Sbjct: 769  GYVPDTNFVLHDVDEELK 786


>ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like
            [Vitis vinifera]
          Length = 705

 Score =  318 bits (815), Expect = 4e-85
 Identities = 148/198 (74%), Positives = 173/198 (87%)
 Frame = -2

Query: 595  NKITFVSLLYACSHAGLVDEGRQFFSSMWRDFNVKPDVKHYTCVVDLLGRAGKLDEAWEL 416
            NKIT VSLLYACSHAGLV+EG +FFS MW D++V+ DVKHYTCVVDLLGRAG+LDEA +L
Sbjct: 433  NKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKL 492

Query: 415  IDRMTVEKDEALWGALLGACRVHSNIGLAERAAESLLQMRPNNSGHFVLLSNIYAKAGRW 236
            I+ MTVEKDE LWGA LGACR H ++ LAE+AA SLL+++P N GH++LLSNIYA AGRW
Sbjct: 493  IESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRW 552

Query: 235  GDVAKMREIMTHRRLKKIPGWTWIEVDDKIHQFSVGDNSHPHSKKIYEMLRILSKKLEIV 56
             DVAK R++M+ RRLKKIPGWTWIEVD+K HQFSVGD +HP SK+IYEML+ L  KLE+V
Sbjct: 553  EDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELV 612

Query: 55   GYVPDTSFVLHDVDEELK 2
            GYVPDT+FVLHDVDEELK
Sbjct: 613  GYVPDTNFVLHDVDEELK 630


>emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  317 bits (812), Expect = 1e-84
 Identities = 147/198 (74%), Positives = 172/198 (86%)
 Frame = -2

Query: 595  NKITFVSLLYACSHAGLVDEGRQFFSSMWRDFNVKPDVKHYTCVVDLLGRAGKLDEAWEL 416
            NKIT VSLLYACSHAGLV+EG +FFS MW D++V+ DVKHYTCVVDLLGRAG+LDEA +L
Sbjct: 1037 NKITLVSLLYACSHAGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKL 1096

Query: 415  IDRMTVEKDEALWGALLGACRVHSNIGLAERAAESLLQMRPNNSGHFVLLSNIYAKAGRW 236
            I  MT EKDE LWGA LGACR H ++ LAE+AA SLL+++P N GH++LLSNIYA AGRW
Sbjct: 1097 IXSMTXEKDEGLWGAFLGACRTHKDVXLAEKAATSLLELQPQNPGHYILLSNIYANAGRW 1156

Query: 235  GDVAKMREIMTHRRLKKIPGWTWIEVDDKIHQFSVGDNSHPHSKKIYEMLRILSKKLEIV 56
             DVAK+R++M+ RRLKKIPGWTWIEVD+K HQFSVGD +HP SK+IYEML+ L  KLE+V
Sbjct: 1157 EDVAKIRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELV 1216

Query: 55   GYVPDTSFVLHDVDEELK 2
            GYVPDT+FVLHDVDEELK
Sbjct: 1217 GYVPDTNFVLHDVDEELK 1234



 Score =  313 bits (802), Expect = 1e-83
 Identities = 146/198 (73%), Positives = 172/198 (86%)
 Frame = -2

Query: 595 NKITFVSLLYACSHAGLVDEGRQFFSSMWRDFNVKPDVKHYTCVVDLLGRAGKLDEAWEL 416
           +KIT  SLLYACSHAGLV+EG +FFSSMW D++V+ DVKHYTCVVDLLGRAG+LDEA +L
Sbjct: 361 DKITLASLLYACSHAGLVEEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEALKL 420

Query: 415 IDRMTVEKDEALWGALLGACRVHSNIGLAERAAESLLQMRPNNSGHFVLLSNIYAKAGRW 236
           I  MT+EKDE LWGA LGACR H ++ LAE+AA SLL+++  N GH+VLLSNIYA AGRW
Sbjct: 421 IKSMTIEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQSQNPGHYVLLSNIYANAGRW 480

Query: 235 GDVAKMREIMTHRRLKKIPGWTWIEVDDKIHQFSVGDNSHPHSKKIYEMLRILSKKLEIV 56
            DVAK+R++M+ RRLKK PGWTWIEVD+K HQFSVGD +HP SK+IYEML+ LS KLE+V
Sbjct: 481 EDVAKIRDLMSQRRLKKTPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLSNKLELV 540

Query: 55  GYVPDTSFVLHDVDEELK 2
           GYVPDT+FVLHDVDEELK
Sbjct: 541 GYVPDTNFVLHDVDEELK 558


>ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 573

 Score =  308 bits (789), Expect = 5e-82
 Identities = 143/198 (72%), Positives = 171/198 (86%)
 Frame = -2

Query: 595 NKITFVSLLYACSHAGLVDEGRQFFSSMWRDFNVKPDVKHYTCVVDLLGRAGKLDEAWEL 416
           N++TFVSLLYACSHAGL++EG +FF+SMW +  V+PDVKHYTC+VDLLGRAG+LDEA  L
Sbjct: 301 NRVTFVSLLYACSHAGLIEEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRL 360

Query: 415 IDRMTVEKDEALWGALLGACRVHSNIGLAERAAESLLQMRPNNSGHFVLLSNIYAKAGRW 236
           I+ MTVEKDE LW ALLGACR+HS + LAE+AA SLL+++P N GH+VLLSNIYAKAG+W
Sbjct: 361 IEAMTVEKDERLWSALLGACRIHSKMELAEKAANSLLELQPQNPGHYVLLSNIYAKAGKW 420

Query: 235 GDVAKMREIMTHRRLKKIPGWTWIEVDDKIHQFSVGDNSHPHSKKIYEMLRILSKKLEIV 56
             VAK R++MT R+LKKIPGWTWIEVD+K +QFSVGD SHP SK+IYEML  L KKLE+ 
Sbjct: 421 EKVAKFRDMMTQRKLKKIPGWTWIEVDNKTYQFSVGDRSHPQSKEIYEMLMSLIKKLEMA 480

Query: 55  GYVPDTSFVLHDVDEELK 2
           GYVPDT FVL DV+EE+K
Sbjct: 481 GYVPDTDFVLQDVEEEVK 498


>ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
           gi|449500964|ref|XP_004161240.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 624

 Score =  284 bits (726), Expect = 9e-75
 Identities = 131/198 (66%), Positives = 166/198 (83%)
 Frame = -2

Query: 595 NKITFVSLLYACSHAGLVDEGRQFFSSMWRDFNVKPDVKHYTCVVDLLGRAGKLDEAWEL 416
           N+ITFVSLLYACSHAGL++EG++FFSSMW ++ V PDVKHYTC+VDLLGRAG+LDEA E+
Sbjct: 352 NRITFVSLLYACSHAGLIEEGQRFFSSMWDEYGVTPDVKHYTCMVDLLGRAGRLDEALEM 411

Query: 415 IDRMTVEKDEALWGALLGACRVHSNIGLAERAAESLLQMRPNNSGHFVLLSNIYAKAGRW 236
           I+ M VEKDE LWGALLGACR+H ++ LAER A SLL+++    GH+VLLSNIYA AG+W
Sbjct: 412 IEGMPVEKDEVLWGALLGACRIHRHLDLAERVARSLLKLQSQKPGHYVLLSNIYANAGKW 471

Query: 235 GDVAKMREIMTHRRLKKIPGWTWIEVDDKIHQFSVGDNSHPHSKKIYEMLRILSKKLEIV 56
            D+AK R++MT   L+KIPG TWIEV +K++QF VGD +HP S +IY+ML+ L +KLE+ 
Sbjct: 472 EDMAKTRDLMTKGGLRKIPGRTWIEVGEKLYQFGVGDKTHPRSNEIYKMLKRLGEKLEVA 531

Query: 55  GYVPDTSFVLHDVDEELK 2
           GY PDT+ VL+DVDEE+K
Sbjct: 532 GYHPDTNDVLYDVDEEVK 549