BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00033958
         (342 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat...   105   4e-21
ref|NP_178323.3| tetratricopeptide repeat-containing protein [Ar...    97   2e-18
ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat...    91   1e-16
ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pen...    82   4e-14
ref|XP_002518803.1| pentatricopeptide repeat-containing protein,...    77   1e-12

>ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Vitis vinifera]
          Length = 755

 Score =  105 bits (262), Expect = 4e-21
 Identities = 55/112 (49%), Positives = 72/112 (64%)
 Frame = +3

Query: 6   PTTTTVFIWFNRFLFLFRYPYSTHVHFDNFDERLNNKEWVRRIAKNECWEEFRGSGLFDS 185
           P+  + FIW + F+ L R+P+ ++ HF NFD    +K+ VR I + + W++FR   LFDS
Sbjct: 37  PSLVSPFIWLSCFICLIRFPFVSNRHFHNFD--CFDKDSVREIVREQRWDDFRIVSLFDS 94

Query: 186 VLAPIRVSRLLVELKDEAVLARSFFRWVGKEKGFCYTIECYCILVHILFKAR 341
            LAPI  SR+LVEL  +A LA  FF W     GF +T E YCILVHILF AR
Sbjct: 95  ALAPIWASRVLVELCQDARLALRFFEWAKGRIGFQHTSEAYCILVHILFCAR 146


>ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|218546751|sp|P0C894.1|PP143_ARATH RecName:
           Full=Putative pentatricopeptide repeat-containing
           protein At2g02150 gi|330250459|gb|AEC05553.1|
           tetratricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 761

 Score = 96.7 bits (239), Expect = 2e-18
 Identities = 45/106 (42%), Positives = 66/106 (62%)
 Frame = +3

Query: 24  FIWFNRFLFLFRYPYSTHVHFDNFDERLNNKEWVRRIAKNECWEEFRGSGLFDSVLAPIR 203
           F+WF  FL + RYP+ T      + E  + ++W+R++  N+ W++     LFD  LAPI 
Sbjct: 52  FVWFTSFLCIIRYPFVTKSGTSTYSEDFD-RDWIRKVVHNDLWDDPGLEKLFDLTLAPIW 110

Query: 204 VSRLLVELKDEAVLARSFFRWVGKEKGFCYTIECYCILVHILFKAR 341
           V R+LVELK++  LA  FF+W     GF +++E YCI+ HILF AR
Sbjct: 111 VPRVLVELKEDPKLAFKFFKWSMTRNGFKHSVESYCIVAHILFCAR 156


>ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Cucumis sativus]
          Length = 786

 Score = 90.5 bits (223), Expect = 1e-16
 Identities = 43/106 (40%), Positives = 70/106 (66%)
 Frame = +3

Query: 24  FIWFNRFLFLFRYPYSTHVHFDNFDERLNNKEWVRRIAKNECWEEFRGSGLFDSVLAPIR 203
           F WF  FL +FR P+ ++ + +N  + L+    +R+I + + W + +   LFDS LAPI 
Sbjct: 73  FFWFTSFLCIFRLPFVSYSNANNSFQYLDIGS-LRKIIQQDLWNDPKIVVLFDSALAPIW 131

Query: 204 VSRLLVELKDEAVLARSFFRWVGKEKGFCYTIECYCILVHILFKAR 341
           VS++L+ L+++  LA  FF+W G + GF +T E YCI+VH++F+AR
Sbjct: 132 VSKILLGLREDPKLALKFFKWAGSQVGFRHTTESYCIIVHLVFRAR 177


>ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g02150-like [Cucumis
           sativus]
          Length = 822

 Score = 82.0 bits (201), Expect = 4e-14
 Identities = 40/100 (40%), Positives = 67/100 (67%)
 Frame = +3

Query: 42  FLFLFRYPYSTHVHFDNFDERLNNKEWVRRIAKNECWEEFRGSGLFDSVLAPIRVSRLLV 221
           FL +FR P+ ++ + +N  + L+    +R+I + + W + +   LFDS LAPI VS++L+
Sbjct: 20  FLCIFRLPFVSYSNANNSFQYLDIGS-LRKIIQQDLWNDPKIVVLFDSALAPIWVSKILL 78

Query: 222 ELKDEAVLARSFFRWVGKEKGFCYTIECYCILVHILFKAR 341
            L+++  LA  FF+W G + GF +T E YCI+VH++F+AR
Sbjct: 79  GLREDPKLALKFFKWAGSQVGFRHTTESYCIIVHLVFRAR 118


>ref|XP_002518803.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223542184|gb|EEF43728.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 775

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 44/100 (44%), Positives = 60/100 (60%)
 Frame = +3

Query: 42  FLFLFRYPYSTHVHFDNFDERLNNKEWVRRIAKNECWEEFRGSGLFDSVLAPIRVSRLLV 221
           FL + R+P+ T     +F  +L+ K  + +I + + W + +     DS L PI VSR+LV
Sbjct: 48  FLCILRFPFITQ---SSFLGQLD-KASIIKIIQQDQWNDPKFVRFIDSSLGPIWVSRVLV 103

Query: 222 ELKDEAVLARSFFRWVGKEKGFCYTIECYCILVHILFKAR 341
           ELK +  LA  FFRW   + GFC T E YC+LVHILF AR
Sbjct: 104 ELKQDPKLALKFFRWAKTKFGFCLTTESYCLLVHILFYAR 143