BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00033920
         (355 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [...    87   1e-15
ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitoc...    80   2e-13
ref|NP_188575.1| RNA pseudourine synthase 4 [Arabidopsis thalian...    72   4e-11
ref|XP_004170490.1| PREDICTED: RNA pseudourine synthase 4, mitoc...    70   2e-10
ref|XP_002883182.1| pseudouridine synthase family protein [Arabi...    68   7e-10

>ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
           gi|223542055|gb|EEF43599.1| ribosomal pseudouridine
           synthase, putative [Ricinus communis]
          Length = 536

 Score = 87.4 bits (215), Expect = 1e-15
 Identities = 44/90 (48%), Positives = 59/90 (65%), Gaps = 7/90 (7%)
 Frame = -1

Query: 295 YTTATSLTKKEAETQN-------KNNGKWFTLPPFTSTIDATSLAKQLXXXXXXXXXXXT 137
           Y T T++T+ ++ T++       KN GK+FTLPP+TSTI  ++L K L           T
Sbjct: 100 YFTTTTITQTKSSTKDQTSKNNTKNTGKFFTLPPYTSTISGSALGKALSATATAKASTET 159

Query: 136 NALKWVTRCCPQLPNSLVHKLFRLRQVRKE 47
            ALKWV RCCP+LP +LV KLFRLRQV++E
Sbjct: 160 TALKWVLRCCPELPRNLVQKLFRLRQVKRE 189


>ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial [Vitis
           vinifera] gi|296090438|emb|CBI40257.3| unnamed protein
           product [Vitis vinifera]
          Length = 476

 Score = 79.7 bits (195), Expect = 2e-13
 Identities = 42/78 (53%), Positives = 46/78 (58%), Gaps = 6/78 (7%)
 Frame = -1

Query: 262 AETQNKNNGKWFTLPPFTSTIDATSLAKQLXXXXXXXXXXXTNA------LKWVTRCCPQ 101
           +E      GKWFTLP FT  +DA+SL K L           T A      LKWV RCCPQ
Sbjct: 46  SEAHKSKKGKWFTLPAFTPVVDASSLGKVLSGHRTDLNTGNTTAGASTTALKWVVRCCPQ 105

Query: 100 LPNSLVHKLFRLRQVRKE 47
           LP SLV KLFRLRQVR+E
Sbjct: 106 LPRSLVQKLFRLRQVRRE 123


>ref|NP_188575.1| RNA pseudourine synthase 4 [Arabidopsis thaliana]
           gi|75274073|sp|Q9LT72.1|PUS4_ARATH RecName: Full=RNA
           pseudourine synthase 4, mitochondrial; AltName: Full=RNA
           pseudouridylate synthase 4; AltName: Full=RNA-uridine
           isomerase 4; Flags: Precursor
           gi|11994467|dbj|BAB02469.1| unnamed protein product
           [Arabidopsis thaliana] gi|110737723|dbj|BAF00800.1|
           hypothetical protein [Arabidopsis thaliana]
           gi|134031916|gb|ABO45695.1| At3g19440 [Arabidopsis
           thaliana] gi|332642719|gb|AEE76240.1| RNA pseudourine
           synthase 4 [Arabidopsis thaliana]
          Length = 477

 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 38/81 (46%), Positives = 49/81 (60%), Gaps = 5/81 (6%)
 Frame = -1

Query: 274 TKKEAETQNKNN-GKWFTLPPFTSTIDATSLAKQLXXXXXXXXXXXTN----ALKWVTRC 110
           T+  + TQ  ++ GKW TLPPF+ TID T++ K L            N    AL+W+ RC
Sbjct: 40  TRSYSTTQTDDSRGKWLTLPPFSPTIDGTAVGKDLLSDGDSVKSSTDNSKTTALRWILRC 99

Query: 109 CPQLPNSLVHKLFRLRQVRKE 47
            P LP +LV KLFRLRQVR+E
Sbjct: 100 RPDLPRTLVQKLFRLRQVRRE 120


>ref|XP_004170490.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cucumis
           sativus]
          Length = 471

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 4/74 (5%)
 Frame = -1

Query: 259 ETQNKNNGKWFTLPPFTSTIDATSLAKQLXXXXXXXXXXXTNA----LKWVTRCCPQLPN 92
           +   K + +WFTLPP+T+T++ + L  ++           + A    LKWV RCCP+LP 
Sbjct: 51  QKNEKGSNRWFTLPPYTATVNGSILGNRIMNGGGQAELGASTAAITALKWVIRCCPELPR 110

Query: 91  SLVHKLFRLRQVRK 50
           SLV KLFRLR+VR+
Sbjct: 111 SLVQKLFRLRKVRR 124


>ref|XP_002883182.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
           lyrata] gi|297329022|gb|EFH59441.1| pseudouridine
           synthase family protein [Arabidopsis lyrata subsp.
           lyrata]
          Length = 477

 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 33/70 (47%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
 Frame = -1

Query: 244 NNGKWFTLPPFTSTIDATSLAKQLXXXXXXXXXXXTN----ALKWVTRCCPQLPNSLVHK 77
           + G W TLPPF+ TID T++ K L            N    AL+W+ RC P LP +LV K
Sbjct: 51  SRGNWLTLPPFSPTIDGTAVGKDLLSDGDSVKASTDNSKTTALRWILRCRPDLPRTLVQK 110

Query: 76  LFRLRQVRKE 47
           LFRLRQVR++
Sbjct: 111 LFRLRQVRRQ 120