BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00033753
         (672 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003631475.1| PREDICTED: pentatricopeptide repeat-containi...   234   9e-60
ref|XP_002527661.1| pentatricopeptide repeat-containing protein,...   227   2e-57
ref|XP_002326536.1| predicted protein [Populus trichocarpa] gi|2...   197   2e-48
ref|XP_003517673.1| PREDICTED: pentatricopeptide repeat-containi...   193   3e-47
ref|XP_003562701.1| PREDICTED: pentatricopeptide repeat-containi...   186   4e-45

>ref|XP_003631475.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
           gi|297742067|emb|CBI33854.3| unnamed protein product
           [Vitis vinifera]
          Length = 767

 Score =  234 bits (598), Expect = 9e-60
 Identities = 113/221 (51%), Positives = 164/221 (74%)
 Frame = -3

Query: 670 YITSVFDVMKNSGPQPDEYTYTIVMNFYCRQAVGQACEYIGKATELIEEMMRCGVSPTVV 491
           ++ S+F+ MK++GP P+ +TYTI+MNFYC+   G+A     +ATE++EEM R G SPTVV
Sbjct: 232 FLRSLFEEMKSTGPPPNVFTYTIMMNFYCKGNFGEADIDTRQATEILEEMERNGESPTVV 291

Query: 490 TYGTYLHGLCRNGMVDSALNLLSELRQRNRHLSSTCYNAVIRGLCRKGEVNEAARLMEEM 311
           TY TY++GLCR G V+SAL+ +  L   N  ++  CYNA+I GLC+KGE++EA +++EEM
Sbjct: 292 TYSTYIYGLCRVGYVESALDFVRSLISANGLVNVYCYNAIIHGLCKKGELDEALKVLEEM 351

Query: 310 KSCGVSPDVHSYSILIDGFXXXXXXXXXXXXKMGNVLRGLDLLEEMKTSGLRPSLVSYTP 131
           KSCG+SPDV++YSILI GF            K G+V +GL L+EEMK S + PSLVSY+ 
Sbjct: 352 KSCGISPDVYTYSILIHGF-----------CKQGDVEKGLYLIEEMKYSNMEPSLVSYSS 400

Query: 130 LLDGLCKSGLAEFAVNLFKEIGAFGYRHDKTSYSILIECYC 8
           L  GLCK  L++ ++++F+++GA GY++D+T+YSILI+ +C
Sbjct: 401 LFHGLCKKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFC 441



 Score =  119 bits (299), Expect = 4e-25
 Identities = 66/218 (30%), Positives = 113/218 (51%)
 Frame = -3

Query: 658 VFDVMKNSGPQPDEYTYTIVMNFYCRQAVGQACEYIGKATELIEEMMRCGVSPTVVTYGT 479
           V + MK+ G  PD YTY+I+++ +C+Q        + K   LIEEM    + P++V+Y +
Sbjct: 347 VLEEMKSCGISPDVYTYSILIHGFCKQGD------VEKGLYLIEEMKYSNMEPSLVSYSS 400

Query: 478 YLHGLCRNGMVDSALNLLSELRQRNRHLSSTCYNAVIRGLCRKGEVNEAARLMEEMKSCG 299
             HGLC+  + D +L++  +L         T Y+ +I+G C +G+++ A +LMEEM    
Sbjct: 401 LFHGLCKKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQGDLDSAHKLMEEMVRNN 460

Query: 298 VSPDVHSYSILIDGFXXXXXXXXXXXXKMGNVLRGLDLLEEMKTSGLRPSLVSYTPLLDG 119
           ++PD  ++  L+ GF            KMG  +  L+    M   G+ PS+ +   ++D 
Sbjct: 461 LAPDPSNFESLVHGF-----------CKMGLWVNALEFFNMMLEGGILPSIATCNVIIDA 509

Query: 118 LCKSGLAEFAVNLFKEIGAFGYRHDKTSYSILIECYCK 5
            C+ G  E A+NL  E+   G   +  +Y+ +I   CK
Sbjct: 510 HCREGRVEEALNLMNEMQTQGIFPNLFTYNAVINRLCK 547



 Score = 97.1 bits (240), Expect = 3e-18
 Identities = 64/219 (29%), Positives = 102/219 (46%)
 Frame = -3

Query: 658  VFDVMKNSGPQPDEYTYTIVMNFYCRQAVGQACEYIGKATELIEEMMRCGVSPTVVTYGT 479
            + + M  +   PD   +  +++ +C+  +         A E    M+  G+ P++ T   
Sbjct: 452  LMEEMVRNNLAPDPSNFESLVHGFCKMGLWV------NALEFFNMMLEGGILPSIATCNV 505

Query: 478  YLHGLCRNGMVDSALNLLSELRQRNRHLSSTCYNAVIRGLCRKGEVNEAARLMEEMKSCG 299
             +   CR G V+ ALNL++E++ +    +   YNAVI  LC++ +   A  L   M    
Sbjct: 506  IIDAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVINRLCKERKSERALELFPLMLKRN 565

Query: 298  VSPDVHSYSILIDGFXXXXXXXXXXXXKMGNVLRGLDLLEEMKTSGLRPSLVSYTPLLDG 119
            V P V  YS LIDGF            K  N  + L L   M   G+ P +V+YT L++ 
Sbjct: 566  VLPSVVVYSTLIDGF-----------AKQSNSQKALMLYARMLKIGVTPDMVAYTILINI 614

Query: 118  LCKSGLAEFAVNLFKEIGAFGYRHDKTSYSILIECYCKL 2
            LC       A NLFK++   G   DK SY+ +I  +C++
Sbjct: 615  LCHRSRMCEAYNLFKKMTENGMTPDKISYTSVIAGFCRI 653



 Score = 92.8 bits (229), Expect = 5e-17
 Identities = 60/217 (27%), Positives = 103/217 (47%)
 Frame = -3

Query: 661  SVFDVMKNSGPQPDEYTYTIVMNFYCRQAVGQACEYIGKATELIEEMMRCGVSPTVVTYG 482
            ++ + M+  G  P+ +TY  V+N  C++   +      +A EL   M++  V P+VV Y 
Sbjct: 521  NLMNEMQTQGIFPNLFTYNAVINRLCKERKSE------RALELFPLMLKRNVLPSVVVYS 574

Query: 481  TYLHGLCRNGMVDSALNLLSELRQRNRHLSSTCYNAVIRGLCRKGEVNEAARLMEEMKSC 302
            T + G  +      AL L + + +         Y  +I  LC +  + EA  L ++M   
Sbjct: 575  TLIDGFAKQSNSQKALMLYARMLKIGVTPDMVAYTILINILCHRSRMCEAYNLFKKMTEN 634

Query: 301  GVSPDVHSYSILIDGFXXXXXXXXXXXXKMGNVLRGLDLLEEMKTSGLRPSLVSYTPLLD 122
            G++PD  SY+ +I GF            ++G++ +   L  EM   G  P++V+YT L+D
Sbjct: 635  GMTPDKISYTSVIAGFC-----------RIGDMRKAWALFNEMLQRGHLPTVVTYTSLVD 683

Query: 121  GLCKSGLAEFAVNLFKEIGAFGYRHDKTSYSILIECY 11
            G CK    + A  L  E+   G   D  +Y++LI  +
Sbjct: 684  GYCKMNRIDIADMLIDEMKRKGITPDVVTYNVLIAAH 720



 Score = 92.0 bits (227), Expect = 9e-17
 Identities = 57/218 (26%), Positives = 103/218 (47%)
 Frame = -3

Query: 655  FDVMKNSGPQPDEYTYTIVMNFYCRQAVGQACEYIGKATELIEEMMRCGVSPTVVTYGTY 476
            F++M   G  P   T  ++++ +CR+        + +A  L+ EM   G+ P + TY   
Sbjct: 488  FNMMLEGGILPSIATCNVIIDAHCREG------RVEEALNLMNEMQTQGIFPNLFTYNAV 541

Query: 475  LHGLCRNGMVDSALNLLSELRQRNRHLSSTCYNAVIRGLCRKGEVNEAARLMEEMKSCGV 296
            ++ LC+    + AL L   + +RN   S   Y+ +I G  ++    +A  L   M   GV
Sbjct: 542  INRLCKERKSERALELFPLMLKRNVLPSVVVYSTLIDGFAKQSNSQKALMLYARMLKIGV 601

Query: 295  SPDVHSYSILIDGFXXXXXXXXXXXXKMGNVLRGLDLLEEMKTSGLRPSLVSYTPLLDGL 116
            +PD+ +Y+ILI+                  +    +L ++M  +G+ P  +SYT ++ G 
Sbjct: 602  TPDMVAYTILIN-----------ILCHRSRMCEAYNLFKKMTENGMTPDKISYTSVIAGF 650

Query: 115  CKSGLAEFAVNLFKEIGAFGYRHDKTSYSILIECYCKL 2
            C+ G    A  LF E+   G+     +Y+ L++ YCK+
Sbjct: 651  CRIGDMRKAWALFNEMLQRGHLPTVVTYTSLVDGYCKM 688



 Score = 88.2 bits (217), Expect = 1e-15
 Identities = 54/180 (30%), Positives = 96/180 (53%)
 Frame = -3

Query: 646  MKNSGPQPDEYTYTIVMNFYCRQAVGQACEYIGKATELIEEMMRCGVSPTVVTYGTYLHG 467
            M   G  PD   YTI++N  C ++  + CE    A  L ++M   G++P  ++Y + + G
Sbjct: 596  MLKIGVTPDMVAYTILINILCHRS--RMCE----AYNLFKKMTENGMTPDKISYTSVIAG 649

Query: 466  LCRNGMVDSALNLLSELRQRNRHLSSTCYNAVIRGLCRKGEVNEAARLMEEMKSCGVSPD 287
             CR G +  A  L +E+ QR    +   Y +++ G C+   ++ A  L++EMK  G++PD
Sbjct: 650  FCRIGDMRKAWALFNEMLQRGHLPTVVTYTSLVDGYCKMNRIDIADMLIDEMKRKGITPD 709

Query: 286  VHSYSILIDGFXXXXXXXXXXXXKMGNVLRGLDLLEEMKTSGLRPSLVSYTPLLDGLCKS 107
            V +Y++LI               + GN+ + L++L EMK +G+ P  ++Y  +L+ L K+
Sbjct: 710  VVTYNVLI-----------AAHRRRGNLDKALEMLNEMKENGVLPDHMTYM-MLEWLLKA 757



 Score = 84.0 bits (206), Expect = 2e-14
 Identities = 56/212 (26%), Positives = 97/212 (45%)
 Frame = -3

Query: 658  VFDVMKNSGPQPDEYTYTIVMNFYCRQAVGQACEYIGKATELIEEMMRCGVSPTVVTYGT 479
            +F +M      P    Y+ +++ + +Q+  Q      KA  L   M++ GV+P +V Y  
Sbjct: 557  LFPLMLKRNVLPSVVVYSTLIDGFAKQSNSQ------KALMLYARMLKIGVTPDMVAYTI 610

Query: 478  YLHGLCRNGMVDSALNLLSELRQRNRHLSSTCYNAVIRGLCRKGEVNEAARLMEEMKSCG 299
             ++ LC    +  A NL  ++ +         Y +VI G CR G++ +A  L  EM   G
Sbjct: 611  LINILCHRSRMCEAYNLFKKMTENGMTPDKISYTSVIAGFCRIGDMRKAWALFNEMLQRG 670

Query: 298  VSPDVHSYSILIDGFXXXXXXXXXXXXKMGNVLRGLDLLEEMKTSGLRPSLVSYTPLLDG 119
              P V +Y+ L+DG+            KM  +     L++EMK  G+ P +V+Y  L+  
Sbjct: 671  HLPTVVTYTSLVDGY-----------CKMNRIDIADMLIDEMKRKGITPDVVTYNVLIAA 719

Query: 118  LCKSGLAEFAVNLFKEIGAFGYRHDKTSYSIL 23
              + G  + A+ +  E+   G   D  +Y +L
Sbjct: 720  HRRRGNLDKALEMLNEMKENGVLPDHMTYMML 751



 Score = 62.4 bits (150), Expect = 8e-08
 Identities = 37/165 (22%), Positives = 81/165 (49%)
 Frame = -3

Query: 499 TVVTYGTYLHGLCRNGMVDSALNLLSELRQRNRHLSSTCYNAVIRGLCRKGEVNEAARLM 320
           +V+ +   +     N M+++A+++  + ++    LS+   N +++ L           L 
Sbjct: 178 SVIVFDLLIKVFAANSMLENAVDVFLQAKKTGLELSTRSCNFLLKCLAEANRREFLRSLF 237

Query: 319 EEMKSCGVSPDVHSYSILIDGFXXXXXXXXXXXXKMGNVLRGLDLLEEMKTSGLRPSLVS 140
           EEMKS G  P+V +Y+I+++ +            +     +  ++LEEM+ +G  P++V+
Sbjct: 238 EEMKSTGPPPNVFTYTIMMNFYCKGNFGEADIDTR-----QATEILEEMERNGESPTVVT 292

Query: 139 YTPLLDGLCKSGLAEFAVNLFKEIGAFGYRHDKTSYSILIECYCK 5
           Y+  + GLC+ G  E A++  + + +     +   Y+ +I   CK
Sbjct: 293 YSTYIYGLCRVGYVESALDFVRSLISANGLVNVYCYNAIIHGLCK 337


>ref|XP_002527661.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223532966|gb|EEF34732.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 766

 Score =  227 bits (578), Expect = 2e-57
 Identities = 113/217 (52%), Positives = 155/217 (71%)
 Frame = -3

Query: 670 YITSVFDVMKNSGPQPDEYTYTIVMNFYCRQAVGQACEYIGKATELIEEMMRCGVSPTVV 491
           +I S+F+ +K+SGP P+ +TYTI+MN+YC+ + G+  + + KATE++EEM   G SPTVV
Sbjct: 231 FIRSLFEELKDSGPSPNVFTYTIMMNYYCKGSFGKNIDIV-KATEVLEEMEMNGESPTVV 289

Query: 490 TYGTYLHGLCRNGMVDSALNLLSELRQRNRHLSSTCYNAVIRGLCRKGEVNEAARLMEEM 311
           TYG Y+HGLCR G V+ AL L+ +LR RN+ L+S CYNAVI   CR GE++EA  L+E+M
Sbjct: 290 TYGAYIHGLCRAGCVEFALRLIRDLRIRNQPLNSYCYNAVIHEFCRNGELHEAFELLEDM 349

Query: 310 KSCGVSPDVHSYSILIDGFXXXXXXXXXXXXKMGNVLRGLDLLEEMKTSGLRPSLVSYTP 131
           +S G+SP  +SYSILIDG             K G V + LDL+EEM  S ++PSLV+Y+ 
Sbjct: 350 RSHGISPTAYSYSILIDGL-----------CKKGQVEKALDLIEEMVQSNVKPSLVTYSS 398

Query: 130 LLDGLCKSGLAEFAVNLFKEIGAFGYRHDKTSYSILI 20
           L DGLCKSGL E ++++F  +GA GY+HD  SY+ LI
Sbjct: 399 LFDGLCKSGLTEISLSMFHNLGAEGYKHDVISYNTLI 435



 Score = 89.7 bits (221), Expect = 5e-16
 Identities = 54/182 (29%), Positives = 92/182 (50%)
 Frame = -3

Query: 622 DEYTYTIVMNFYCRQAVGQACEYIGKATELIEEMMRCGVSPTVVTYGTYLHGLCRNGMVD 443
           + Y Y  V++ +CR         + +A EL+E+M   G+SPT  +Y   + GLC+ G V+
Sbjct: 322 NSYCYNAVIHEFCRNGE------LHEAFELLEDMRSHGISPTAYSYSILIDGLCKKGQVE 375

Query: 442 SALNLLSELRQRNRHLSSTCYNAVIRGLCRKGEVNEAARLMEEMKSCGVSPDVHSYSILI 263
            AL+L+ E+ Q N   S   Y+++  GLC+ G    +  +   + + G   DV SY+ LI
Sbjct: 376 KALDLIEEMVQSNVKPSLVTYSSLFDGLCKSGLTEISLSMFHNLGAEGYKHDVISYNTLI 435

Query: 262 DGFXXXXXXXXXXXXKMGNVLRGLDLLEEMKTSGLRPSLVSYTPLLDGLCKSGLAEFAVN 83
           +GF             MG+  +   L+ EM+ +G  P+  ++  L+ G CK    + A+ 
Sbjct: 436 NGF--------VLQRDMGSACK---LVHEMRMNGSVPNSFTFNRLIHGFCKRQRLDKALE 484

Query: 82  LF 77
           +F
Sbjct: 485 VF 486



 Score = 79.3 bits (194), Expect = 6e-13
 Identities = 56/215 (26%), Positives = 102/215 (47%)
 Frame = -3

Query: 646  MKNSGPQPDEYTYTIVMNFYCRQAVGQACEYIGKATELIEEMMRCGVSPTVVTYGTYLHG 467
            M+ +G  P+ +T+  +++ +C++      + + KA E+   M++ GV   + T       
Sbjct: 454  MRMNGSVPNSFTFNRLIHGFCKR------QRLDKALEVFTIMLKVGVQLNIFTCNIMADE 507

Query: 466  LCRNGMVDSALNLLSELRQRNRHLSSTCYNAVIRGLCRKGEVNEAARLMEEMKSCGVSPD 287
              R G    AL L++E++      +S  YN VI+ LC++ +  +A  ++  M    V P 
Sbjct: 508  FNREGHFWEALKLINEVQDLGIVPNSYTYNIVIKWLCKEQKTEKAWEVLPVMLKNNVFPC 567

Query: 286  VHSYSILIDGFXXXXXXXXXXXXKMGNVLRGLDLLEEMKTSGLRPSLVSYTPLLDGLCKS 107
               Y+ LIDG+            K  N  + L L  +M   G+ PS+V+YT L++     
Sbjct: 568  AIHYNTLIDGYA-----------KQSNPTKALLLYAKMLKVGIPPSIVTYTMLINMFSNR 616

Query: 106  GLAEFAVNLFKEIGAFGYRHDKTSYSILIECYCKL 2
               + A  LFKE+   G   D+  ++ +I  +CK+
Sbjct: 617  SKMQEAYYLFKEMIKKGLVPDEIIFTCIIAGFCKV 651



 Score = 75.9 bits (185), Expect = 7e-12
 Identities = 58/215 (26%), Positives = 99/215 (46%)
 Frame = -3

Query: 646  MKNSGPQPDEYTYTIVMNFYCRQAVGQACEYIGKATELIEEMMRCGVSPTVVTYGTYLHG 467
            +++ G  P+ YTY IV+ + C++   +      KA E++  M++  V P  + Y T + G
Sbjct: 524  VQDLGIVPNSYTYNIVIKWLCKEQKTE------KAWEVLPVMLKNNVFPCAIHYNTLIDG 577

Query: 466  LCRNGMVDSALNLLSELRQRNRHLSSTCYNAVIRGLCRKGEVNEAARLMEEMKSCGVSPD 287
              +      AL L +++ +     S   Y  +I     + ++ EA  L +EM   G+ PD
Sbjct: 578  YAKQSNPTKALLLYAKMLKVGIPPSIVTYTMLINMFSNRSKMQEAYYLFKEMIKKGLVPD 637

Query: 286  VHSYSILIDGFXXXXXXXXXXXXKMGNVLRGLDLLEEMKTSGLRPSLVSYTPLLDGLCKS 107
               ++ +I GF            K+G++     L EEM   G  P++V+YT L+DG  K 
Sbjct: 638  EIIFTCIIAGFC-----------KVGDMKSAWALYEEMSQWGKSPNVVTYTCLIDGYFKI 686

Query: 106  GLAEFAVNLFKEIGAFGYRHDKTSYSILIECYCKL 2
               + A  LF ++       D  +Y+ LI  Y  L
Sbjct: 687  KRMDKADFLFNKMKRDNVTPDGLTYTALIFGYQSL 721



 Score = 65.1 bits (157), Expect = 1e-08
 Identities = 37/177 (20%), Positives = 84/177 (47%)
 Frame = -3

Query: 535 LIEEMMRCGVSPTVVTYGTYLHGLCRNGMVDSALNLLSELRQRNRHLSSTCYNAVIRGLC 356
           L++      +  +++     +     N M+  A ++  + R+    L+    N ++    
Sbjct: 165 LLDSPQDAHMGGSIIVANVLIKVFAENNMLVDAADVFVQARRFGLELNILSCNFLLNCFA 224

Query: 355 RKGEVNEAARLMEEMKSCGVSPDVHSYSILIDGFXXXXXXXXXXXXKMGNVLRGLDLLEE 176
              +      L EE+K  G SP+V +Y+I+++ +            K  ++++  ++LEE
Sbjct: 225 EANQTEFIRSLFEELKDSGPSPNVFTYTIMMNYY------CKGSFGKNIDIVKATEVLEE 278

Query: 175 MKTSGLRPSLVSYTPLLDGLCKSGLAEFAVNLFKEIGAFGYRHDKTSYSILIECYCK 5
           M+ +G  P++V+Y   + GLC++G  EFA+ L +++       +   Y+ +I  +C+
Sbjct: 279 MEMNGESPTVVTYGAYIHGLCRAGCVEFALRLIRDLRIRNQPLNSYCYNAVIHEFCR 335


>ref|XP_002326536.1| predicted protein [Populus trichocarpa] gi|222833858|gb|EEE72335.1|
           predicted protein [Populus trichocarpa]
          Length = 697

 Score =  197 bits (501), Expect = 2e-48
 Identities = 99/221 (44%), Positives = 145/221 (65%)
 Frame = -3

Query: 667 ITSVFDVMKNSGPQPDEYTYTIVMNFYCRQAVGQACEYIGKATELIEEMMRCGVSPTVVT 488
           + S+FD +KNSGP P+ YTYTI++NFYC++  GQ  + + +A+ ++EEM   G +PTVVT
Sbjct: 169 VRSLFDDLKNSGPSPNVYTYTIMINFYCKERHGQNID-MEQASLILEEMEEKGENPTVVT 227

Query: 487 YGTYLHGLCRNGMVDSALNLLSELRQRNRHLSSTCYNAVIRGLCRKGEVNEAARLMEEMK 308
           YG Y+HGLCR G ++ A N + +LR  N+ L+  CYNA+I+G C+KG  +EA +L+EEMK
Sbjct: 228 YGVYIHGLCRVGSIEDAWNKIQDLRSSNQPLNIYCYNALIQGFCQKGRPDEALKLLEEMK 287

Query: 307 SCGVSPDVHSYSILIDGFXXXXXXXXXXXXKMGNVLRGLDLLEEMKTSGLRPSLVSYTPL 128
             G+SPD++SYSIL++ F              G++  G++L++EM+    +P LV  T +
Sbjct: 288 DEGISPDIYSYSILVNAFCTE-----------GDIESGMNLIQEMEHCNKKPPLVCCTSV 336

Query: 127 LDGLCKSGLAEFAVNLFKEIGAFGYRHDKTSYSILIECYCK 5
           L GL   GL    +N F E+ A GY+HD  SYS LI  + K
Sbjct: 337 LMGLRTKGLVNDCLNFFHELSAKGYKHDLISYSTLIHGFLK 377



 Score = 87.0 bits (214), Expect = 3e-15
 Identities = 53/215 (24%), Positives = 103/215 (47%)
 Frame = -3

Query: 646 MKNSGPQPDEYTYTIVMNFYCRQAVGQACEYIGKATELIEEMMRCGVSPTVVTYGTYLHG 467
           M+ +G  PD   Y  ++  YCR+        + +A +    M++ G+ P ++T    +  
Sbjct: 391 MRKNGLVPDYIIYISLIREYCRKGC------LKEALKNFYTMLQDGLQPDIITCNHIVDQ 444

Query: 466 LCRNGMVDSALNLLSELRQRNRHLSSTCYNAVIRGLCRKGEVNEAARLMEEMKSCGVSPD 287
            C  G  + AL  +++++ +N   +S  Y+ +I  LC+   V +A  ++  M    + P 
Sbjct: 445 YCSRGQFEEALIYINQMKDQNILPNSYTYSVIINWLCKYQAVEKAWEVLPVMFKDNIFPS 504

Query: 286 VHSYSILIDGFXXXXXXXXXXXXKMGNVLRGLDLLEEMKTSGLRPSLVSYTPLLDGLCKS 107
           V  Y+ ++DG+            +  N ++   L  +M   G +P  V+ T L+D   K 
Sbjct: 505 VIHYTTIMDGY----------AKQFKNPMKAWKLYRKMPKLGCKPDNVTLTVLVDMFSKR 554

Query: 106 GLAEFAVNLFKEIGAFGYRHDKTSYSILIECYCKL 2
           G    A+NLFKE+   G   D+ +++ +I+ YC++
Sbjct: 555 GKMSKALNLFKEMAEEGLSRDEFAFTAIIDGYCRV 589



 Score = 84.0 bits (206), Expect = 2e-14
 Identities = 61/238 (25%), Positives = 104/238 (43%), Gaps = 30/238 (12%)
 Frame = -3

Query: 646  MKNSGPQPDEYTYTIVMNFYCR-QAVGQACEYIG-------------------------- 548
            MK+    P+ YTY++++N+ C+ QAV +A E +                           
Sbjct: 461  MKDQNILPNSYTYSVIINWLCKYQAVEKAWEVLPVMFKDNIFPSVIHYTTIMDGYAKQFK 520

Query: 547  ---KATELIEEMMRCGVSPTVVTYGTYLHGLCRNGMVDSALNLLSELRQRNRHLSSTCYN 377
               KA +L  +M + G  P  VT    +    + G +  ALNL  E+ +         + 
Sbjct: 521  NPMKAWKLYRKMPKLGCKPDNVTLTVLVDMFSKRGKMSKALNLFKEMAEEGLSRDEFAFT 580

Query: 376  AVIRGLCRKGEVNEAARLMEEMKSCGVSPDVHSYSILIDGFXXXXXXXXXXXXKMGNVLR 197
            A+I G CR G V  A  + ++MK   V+P+V +Y+ L+DGF            K+  +  
Sbjct: 581  AIIDGYCRVGNVKRAWSMYKKMKRNNVTPNVKTYTCLVDGF-----------CKLKRLDM 629

Query: 196  GLDLLEEMKTSGLRPSLVSYTPLLDGLCKSGLAEFAVNLFKEIGAFGYRHDKTSYSIL 23
               L+++MK + + P + +YT L+ G  +    + A  +F E+   G   D  +Y  L
Sbjct: 630  ATMLIDDMKRNSVTPDVKTYTALIAGYQRIENIDRAYEVFDEMKKKGTLPDHIAYLTL 687



 Score = 82.8 bits (203), Expect = 6e-14
 Identities = 57/218 (26%), Positives = 94/218 (43%)
 Frame = -3

Query: 658 VFDVMKNSGPQPDEYTYTIVMNFYCRQAVGQACEYIGKATELIEEMMRCGVSPTVVTYGT 479
           + + MK+ G  PD Y+Y+I++N +C +        I     LI+EM  C   P +V   +
Sbjct: 282 LLEEMKDEGISPDIYSYSILVNAFCTEGD------IESGMNLIQEMEHCNKKPPLVCCTS 335

Query: 478 YLHGLCRNGMVDSALNLLSELRQRNRHLSSTCYNAVIRGLCRKGEVNEAARLMEEMKSCG 299
            L GL   G+V+  LN   EL  +        Y+ +I G  +   V  A  L+ EM+  G
Sbjct: 336 VLMGLRTKGLVNDCLNFFHELSAKGYKHDLISYSTLIHGFLKGHNVKSANNLVHEMRKNG 395

Query: 298 VSPDVHSYSILIDGFXXXXXXXXXXXXKMGNVLRGLDLLEEMKTSGLRPSLVSYTPLLDG 119
           + PD   Y  LI  +            + G +   L     M   GL+P +++   ++D 
Sbjct: 396 LVPDYIIYISLIREY-----------CRKGCLKEALKNFYTMLQDGLQPDIITCNHIVDQ 444

Query: 118 LCKSGLAEFAVNLFKEIGAFGYRHDKTSYSILIECYCK 5
            C  G  E A+    ++       +  +YS++I   CK
Sbjct: 445 YCSRGQFEEALIYINQMKDQNILPNSYTYSVIINWLCK 482



 Score = 62.4 bits (150), Expect = 8e-08
 Identities = 38/132 (28%), Positives = 66/132 (50%)
 Frame = -3

Query: 661 SVFDVMKNSGPQPDEYTYTIVMNFYCRQAVGQACEYIGKATELIEEMMRCGVSPTVVTYG 482
           ++F  M   G   DE+ +T +++ YCR  VG     + +A  + ++M R  V+P V TY 
Sbjct: 562 NLFKEMAEEGLSRDEFAFTAIIDGYCR--VGN----VKRAWSMYKKMKRNNVTPNVKTYT 615

Query: 481 TYLHGLCRNGMVDSALNLLSELRQRNRHLSSTCYNAVIRGLCRKGEVNEAARLMEEMKSC 302
             + G C+   +D A  L+ ++++ +       Y A+I G  R   ++ A  + +EMK  
Sbjct: 616 CLVDGFCKLKRLDMATMLIDDMKRNSVTPDVKTYTALIAGYQRIENIDRAYEVFDEMKKK 675

Query: 301 GVSPDVHSYSIL 266
           G  PD  +Y  L
Sbjct: 676 GTLPDHIAYLTL 687


>ref|XP_003517673.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 827

 Score =  193 bits (490), Expect = 3e-47
 Identities = 99/222 (44%), Positives = 146/222 (65%), Gaps = 1/222 (0%)
 Frame = -3

Query: 670 YITSVFDVMKNSGPQPDEYTYTIVMNFYCRQAVGQACEY-IGKATELIEEMMRCGVSPTV 494
           ++  VF+ +K+ GP P+ YTYTI+MNFYC       C+  + +A  ++ ++ R G  PTV
Sbjct: 300 FVRRVFEELKDRGPSPNIYTYTIMMNFYCSDV---GCDAGMRQAAVILGKIYRSGEKPTV 356

Query: 493 VTYGTYLHGLCRNGMVDSALNLLSELRQRNRHLSSTCYNAVIRGLCRKGEVNEAARLMEE 314
           VTY TY+HGLC+ G V++AL L+  L   N+ L+S  +N VI G C++GEV EA +++EE
Sbjct: 357 VTYSTYIHGLCKVGNVEAALMLIRNLHYTNQPLNSHSFNDVIYGFCKRGEVFEALQVLEE 416

Query: 313 MKSCGVSPDVHSYSILIDGFXXXXXXXXXXXXKMGNVLRGLDLLEEMKTSGLRPSLVSYT 134
           MKS G+ PDV+SYSILI+ F              G+V++ LDL+EEM+ S ++PS+VSYT
Sbjct: 417 MKSSGILPDVYSYSILINAFCG-----------KGDVMKCLDLMEEMEHSQIKPSIVSYT 465

Query: 133 PLLDGLCKSGLAEFAVNLFKEIGAFGYRHDKTSYSILIECYC 8
            L+ GLCK  + + AV++F  IGA   ++D T Y  LI+ +C
Sbjct: 466 SLIHGLCKKNMLQNAVDIFHSIGASSCKYDSTVYETLIDGFC 507



 Score =  111 bits (277), Expect = 1e-22
 Identities = 62/218 (28%), Positives = 113/218 (51%)
 Frame = -3

Query: 658  VFDVMKNSGPQPDEYTYTIVMNFYCRQAVGQACEYIGKATELIEEMMRCGVSPTVVTYGT 479
            V + MK+SG  PD Y+Y+I++N +C +     C       +L+EEM    + P++V+Y +
Sbjct: 413  VLEEMKSSGILPDVYSYSILINAFCGKGDVMKC------LDLMEEMEHSQIKPSIVSYTS 466

Query: 478  YLHGLCRNGMVDSALNLLSELRQRNRHLSSTCYNAVIRGLCRKGEVNEAARLMEEMKSCG 299
             +HGLC+  M+ +A+++   +   +    ST Y  +I G C +G+++ A +L+EEM    
Sbjct: 467  LIHGLCKKNMLQNAVDIFHSIGASSCKYDSTVYETLIDGFCMQGDMDSAIKLLEEMICNE 526

Query: 298  VSPDVHSYSILIDGFXXXXXXXXXXXXKMGNVLRGLDLLEEMKTSGLRPSLVSYTPLLDG 119
            + P   S   LI G+            K+G   + L++   M   G+ P  ++   +LDG
Sbjct: 527  LVPTAFSCRSLIRGY-----------YKLGLFDQALEVFNAMLRDGIWPDTIACNYILDG 575

Query: 118  LCKSGLAEFAVNLFKEIGAFGYRHDKTSYSILIECYCK 5
             C++G  + A+ L ++    G+  +  SY+ +I   CK
Sbjct: 576  SCRAGYFKEALTLLEDFQEHGFNLNPHSYNAIIYKLCK 613



 Score = 85.9 bits (211), Expect = 7e-15
 Identities = 56/180 (31%), Positives = 83/180 (46%)
 Frame = -3

Query: 547  KATELIEEMMRCGVSPTVVTYGTYLHGLCRNGMVDSALNLLSELRQRNRHLSSTCYNAVI 368
            +A E+   M+R G+ P  +     L G CR G    AL LL + ++   +L+   YNA+I
Sbjct: 549  QALEVFNAMLRDGIWPDTIACNYILDGSCRAGYFKEALTLLEDFQEHGFNLNPHSYNAII 608

Query: 367  RGLCRKGEVNEAARLMEEMKSCGVSPDVHSYSILIDGFXXXXXXXXXXXXKMGNVLRGLD 188
              LC++G    A  L+  M    V P V +YS LI GF            K  N  R ++
Sbjct: 609  YKLCKEGYPERALELLPRMLKRNVLPSVVNYSTLISGF-----------AKQSNFKRAVN 657

Query: 187  LLEEMKTSGLRPSLVSYTPLLDGLCKSGLAEFAVNLFKEIGAFGYRHDKTSYSILIECYC 8
            L   M   G+  ++ +YT L+     S     A  +FKE+   G   D+ SY+ LI  +C
Sbjct: 658  LFTRMVKVGITFNIATYTILMSIFSHSHKMHEAYGIFKEMKERGLCLDQISYTTLIVGFC 717



 Score = 81.3 bits (199), Expect = 2e-13
 Identities = 52/204 (25%), Positives = 95/204 (46%)
 Frame = -3

Query: 616  YTYTIVMNFYCRQAVGQACEYIGKATELIEEMMRCGVSPTVVTYGTYLHGLCRNGMVDSA 437
            ++Y  ++   C++       Y  +A EL+  M++  V P+VV Y T + G  +      A
Sbjct: 602  HSYNAIIYKLCKEG------YPERALELLPRMLKRNVLPSVVNYSTLISGFAKQSNFKRA 655

Query: 436  LNLLSELRQRNRHLSSTCYNAVIRGLCRKGEVNEAARLMEEMKSCGVSPDVHSYSILIDG 257
            +NL + + +     +   Y  ++       +++EA  + +EMK  G+  D  SY+ LI G
Sbjct: 656  VNLFTRMVKVGITFNIATYTILMSIFSHSHKMHEAYGIFKEMKERGLCLDQISYTTLIVG 715

Query: 256  FXXXXXXXXXXXXKMGNVLRGLDLLEEMKTSGLRPSLVSYTPLLDGLCKSGLAEFAVNLF 77
            F                + +   L EEM   G  P++++YT ++DG CKS   + A  +F
Sbjct: 716  FCNNR-----------EMKKAWALFEEMSREGCSPNVITYTCIIDGFCKSNRIDLATWVF 764

Query: 76   KEIGAFGYRHDKTSYSILIECYCK 5
             ++       D  +Y++LI+ Y K
Sbjct: 765  DKMNRDSVIPDVVTYTVLIDWYHK 788



 Score = 69.3 bits (168), Expect = 6e-10
 Identities = 47/201 (23%), Positives = 89/201 (44%)
 Frame = -3

Query: 625  PDEYTYTIVMNFYCRQAVGQACEYIGKATELIEEMMRCGVSPTVVTYGTYLHGLCRNGMV 446
            P    Y+ +++ + +Q+         +A  L   M++ G++  + TY   +     +  +
Sbjct: 634  PSVVNYSTLISGFAKQS------NFKRAVNLFTRMVKVGITFNIATYTILMSIFSHSHKM 687

Query: 445  DSALNLLSELRQRNRHLSSTCYNAVIRGLCRKGEVNEAARLMEEMKSCGVSPDVHSYSIL 266
              A  +  E+++R   L    Y  +I G C   E+ +A  L EEM   G SP+V +Y+ +
Sbjct: 688  HEAYGIFKEMKERGLCLDQISYTTLIVGFCNNREMKKAWALFEEMSREGCSPNVITYTCI 747

Query: 265  IDGFXXXXXXXXXXXXKMGNVLRGLDLLEEMKTSGLRPSLVSYTPLLDGLCKSGLAEFAV 86
            IDGF            K   +     + ++M    + P +V+YT L+D   K G  + A 
Sbjct: 748  IDGF-----------CKSNRIDLATWVFDKMNRDSVIPDVVTYTVLIDWYHKHGYFDQAH 796

Query: 85   NLFKEIGAFGYRHDKTSYSIL 23
             L+  +   G   D  ++++L
Sbjct: 797  KLYDVMKDKGVLPDDITHNVL 817



 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 41/195 (21%), Positives = 87/195 (44%)
 Frame = -3

Query: 589 YCRQAVGQACEYIGKATELIEEMMRCGVSPTVVTYGTYLHGLCRNGMVDSALNLLSELRQ 410
           +C +A     E      +  + + R GV      +   +     N M+++AL++ S  + 
Sbjct: 221 FCNEAKYDTFELFSAFLDSPQHVERSGV-----VFDVLISVFASNSMLENALDVFSNAKH 275

Query: 409 RNRHLSSTCYNAVIRGLCRKGEVNEAARLMEEMKSCGVSPDVHSYSILIDGFXXXXXXXX 230
                     N +++ L     V    R+ EE+K  G SP++++Y+I+++ +        
Sbjct: 276 VGLEPDIRTCNFLLKCLVEANRVEFVRRVFEELKDRGPSPNIYTYTIMMNFYCSDVGCD- 334

Query: 229 XXXXKMGNVLRGLDLLEEMKTSGLRPSLVSYTPLLDGLCKSGLAEFAVNLFKEIGAFGYR 50
                   + +   +L ++  SG +P++V+Y+  + GLCK G  E A+ L + +      
Sbjct: 335 ------AGMRQAAVILGKIYRSGEKPTVVTYSTYIHGLCKVGNVEAALMLIRNLHYTNQP 388

Query: 49  HDKTSYSILIECYCK 5
            +  S++ +I  +CK
Sbjct: 389 LNSHSFNDVIYGFCK 403


>ref|XP_003562701.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Brachypodium distachyon]
          Length = 726

 Score =  186 bits (472), Expect = 4e-45
 Identities = 99/222 (44%), Positives = 135/222 (60%)
 Frame = -3

Query: 670 YITSVFDVMKNSGPQPDEYTYTIVMNFYCRQAVGQACEYIGKATELIEEMMRCGVSPTVV 491
           Y  S+FD MK+SGP P+ Y+Y+++M+ Y     G    Y+ +A EL+ EM   GV P   
Sbjct: 192 YARSLFDDMKSSGPSPNVYSYSVLMSAYTH---GDRL-YLAEAFELLSEMEMKGVKPNAA 247

Query: 490 TYGTYLHGLCRNGMVDSALNLLSELRQRNRHLSSTCYNAVIRGLCRKGEVNEAARLMEEM 311
           TYGTYL+GL R   V SA N L  L QR    ++ C+NAVI+G CR+G+V EA  + + M
Sbjct: 248 TYGTYLYGLSRTRQVASAWNFLQMLCQRGNPCNTYCFNAVIQGFCREGQVQEAIEVFDAM 307

Query: 310 KSCGVSPDVHSYSILIDGFXXXXXXXXXXXXKMGNVLRGLDLLEEMKTSGLRPSLVSYTP 131
           K  G+ PD HSYSIL+DG             K G+VL G DLL EM  +G+ P+LVSY+ 
Sbjct: 308 KKGGLVPDTHSYSILVDGL-----------CKQGDVLTGYDLLVEMARNGIAPTLVSYSS 356

Query: 130 LLDGLCKSGLAEFAVNLFKEIGAFGYRHDKTSYSILIECYCK 5
           LL GLC++G  E A  LF+ +   G++HD   YSI++   C+
Sbjct: 357 LLHGLCRAGKVELAFELFRRLEEQGFKHDHIVYSIILNGCCQ 398



 Score =  103 bits (256), Expect = 4e-20
 Identities = 63/219 (28%), Positives = 106/219 (48%)
 Frame = -3

Query: 658 VFDVMKNSGPQPDEYTYTIVMNFYCRQAVGQACEYIGKATELIEEMMRCGVSPTVVTYGT 479
           VFD MK  G  PD ++Y+I+++  C+Q        +    +L+ EM R G++PT+V+Y +
Sbjct: 303 VFDAMKKGGLVPDTHSYSILVDGLCKQGD------VLTGYDLLVEMARNGIAPTLVSYSS 356

Query: 478 YLHGLCRNGMVDSALNLLSELRQRNRHLSSTCYNAVIRGLCRKGEVNEAARLMEEMKSCG 299
            LHGLCR G V+ A  L   L ++        Y+ ++ G C+   +     L  +M    
Sbjct: 357 LLHGLCRAGKVELAFELFRRLEEQGFKHDHIVYSIILNGCCQHLNIEVVCDLWNDMVHHN 416

Query: 298 VSPDVHSYSILIDGFXXXXXXXXXXXXKMGNVLRGLDLLEEMKTSGLRPSLVSYTPLLDG 119
             PD ++Y+ LI  F            +  N+   L + E M  SG+ P++V+ T L+DG
Sbjct: 417 FVPDAYNYTSLIYAF-----------CRHRNLTDALGVFELMLDSGVSPNVVTCTILVDG 465

Query: 118 LCKSGLAEFAVNLFKEIGAFGYRHDKTSYSILIECYCKL 2
             K  + + A     ++  FG   +   Y ++I   CK+
Sbjct: 466 FGKERMIDEAFLFLHKVRQFGIVPNLCMYRVIINGLCKV 504



 Score = 95.1 bits (235), Expect = 1e-17
 Identities = 63/207 (30%), Positives = 93/207 (44%)
 Frame = -3

Query: 625 PDEYTYTIVMNFYCRQAVGQACEYIGKATELIEEMMRCGVSPTVVTYGTYLHGLCRNGMV 446
           PD Y YT ++  +CR         +  A  + E M+  GVSP VVT    + G  +  M+
Sbjct: 419 PDAYNYTSLIYAFCRH------RNLTDALGVFELMLDSGVSPNVVTCTILVDGFGKERMI 472

Query: 445 DSALNLLSELRQRNRHLSSTCYNAVIRGLCRKGEVNEAARLMEEMKSCGVSPDVHSYSIL 266
           D A   L ++RQ     +   Y  +I GLC+  + +    +  +M   G  PD   YSI+
Sbjct: 473 DEAFLFLHKVRQFGIVPNLCMYRVIINGLCKVNKSDHVWGIFADMIKRGYVPDTVVYSII 532

Query: 265 IDGFXXXXXXXXXXXXKMGNVLRGLDLLEEMKTSGLRPSLVSYTPLLDGLCKSGLAEFAV 86
           ID F            K   +     L  +M   G +P++ +YT L++GLC        V
Sbjct: 533 IDSF-----------VKALKLPEAFRLFHKMLDEGTKPNVFTYTSLINGLCHDDRLPEVV 581

Query: 85  NLFKEIGAFGYRHDKTSYSILIECYCK 5
            LFK +   G   D+  Y+ LI CYCK
Sbjct: 582 TLFKHMIWEGLTPDRILYTSLIVCYCK 608



 Score = 68.9 bits (167), Expect = 8e-10
 Identities = 48/189 (25%), Positives = 82/189 (43%)
 Frame = -3

Query: 670  YITSVFDVMKNSGPQPDEYTYTIVMNFYCRQAVGQACEYIGKATELIEEMMRCGVSPTVV 491
            ++  +F  M   G  PD   Y+I+++ + +         + +A  L  +M+  G  P V 
Sbjct: 509  HVWGIFADMIKRGYVPDTVVYSIIIDSFVKALK------LPEAFRLFHKMLDEGTKPNVF 562

Query: 490  TYGTYLHGLCRNGMVDSALNLLSELRQRNRHLSSTCYNAVIRGLCRKGEVNEAARLMEEM 311
            TY + ++GLC +  +   + L   +           Y ++I   C++  +  A  +   M
Sbjct: 563  TYTSLINGLCHDDRLPEVVTLFKHMIWEGLTPDRILYTSLIVCYCKRSNMKAALEIFRGM 622

Query: 310  KSCGVSPDVHSYSILIDGFXXXXXXXXXXXXKMGNVLRGLDLLEEMKTSGLRPSLVSYTP 131
               G+S D   Y+ LI GF            K+  +     L+EEM   GL PS+V+YT 
Sbjct: 623  GKLGLSADAFLYTCLIGGF-----------SKVLAMDGAQCLMEEMTNKGLTPSVVTYTN 671

Query: 130  LLDGLCKSG 104
            L+ G  K G
Sbjct: 672  LIIGYFKIG 680