BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00033730
         (684 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD32264.2| RNA-directed DNA polymerase , putative [Medicago ...   115   6e-24
gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...   115   8e-24
gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas...   111   2e-22
gb|ABD32279.2| reverse transcriptase, putative [Medicago truncat...    91   2e-16
gb|ABD28538.2| RNA-directed DNA polymerase , putative [Medicago ...    83   4e-14

>gb|ABD32264.2| RNA-directed DNA polymerase , putative [Medicago truncatula]
          Length = 161

 Score =  115 bits (289), Expect = 6e-24
 Identities = 61/131 (46%), Positives = 83/131 (63%), Gaps = 16/131 (12%)
 Frame = +3

Query: 36  SIPFRYLGVPIFVGKPTKAHLMPLVDKVRSKLTGWQRQRRLLSIMGRAQLVHSVIQNLLL 215
           ++PF YLGVPIF GKP   HL P+VDK+ +KL+ W+    LLSI GR Q+V SVIQ++L 
Sbjct: 32  TLPFTYLGVPIFKGKPKVIHLQPIVDKIIAKLSTWKAS--LLSIAGRVQMVKSVIQSMLT 89

Query: 216 YSFAICAWPVNLLKKLDS*IRNFIWTGDPEKRMVLTV----------------RSVKALN 347
           +S  +  WP +LLK L+  I+NFIW+GD  KR ++TV                RS+  LN
Sbjct: 90  HSITVYNWPTSLLKDLEKSIKNFIWSGDTSKRKLVTVAWKKLCRPFDQGGLRIRSLIQLN 149

Query: 348 KASMIKLTWHL 380
            AS +KL W++
Sbjct: 150 SASNLKLCWNI 160


>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 642

 Score =  115 bits (288), Expect = 8e-24
 Identities = 57/132 (43%), Positives = 86/132 (65%), Gaps = 16/132 (12%)
 Frame = +3

Query: 36  SIPFRYLGVPIFVGKPTKAHLMPLVDKVRSKLTGWQRQRRLLSIMGRAQLVHSVIQNLLL 215
           S+PF YLG PIF GKP   H  P+ DKV++KL  W+    LLSI GR QLV SV+Q++L+
Sbjct: 491 SLPFTYLGAPIFKGKPKGIHFQPIADKVKAKLAKWKAS--LLSIAGRIQLVKSVVQSMLV 548

Query: 216 YSFAICAWPVNLLKKLDS*IRNFIWTGDPEKRMVLT----------------VRSVKALN 347
           ++ +I +WP+ +LK+++  I+NFIW+GD  KR ++T                V+S+  LN
Sbjct: 549 HTMSIYSWPIKILKEMEKWIKNFIWSGDVTKRKMVTVAWRKICADYEEGGLGVKSLICLN 608

Query: 348 KASMIKLTWHLM 383
           +A+ +K+ W+LM
Sbjct: 609 EATNLKICWNLM 620


>gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 528

 Score =  111 bits (277), Expect = 2e-22
 Identities = 58/143 (40%), Positives = 86/143 (60%), Gaps = 16/143 (11%)
 Frame = +3

Query: 3   EIL*ALEIKEWSIPFRYLGVPIFVGKPTKAHLMPLVDKVRSKLTGWQRQRRLLSIMGRAQ 182
           +++  +   + S PF YLGVPIF GKP    L P+VDK+++KL+ W+    +LSI GR Q
Sbjct: 386 QLINVIGFNKGSFPFNYLGVPIFKGKPKARFLQPIVDKIKTKLSNWKAS--ILSIAGRVQ 443

Query: 183 LVHSVIQNLLLYSFAICAWPVNLLKKLDS*IRNFIWTGDPEKRMVLTV------------ 326
           L+ SV Q++L+++  I  WP  LLK+L++  RNFIW+GD  KR ++TV            
Sbjct: 444 LIKSVAQSMLIHTITIYDWPSFLLKELETCFRNFIWSGDITKRKLVTVAWKKLCKPQSQG 503

Query: 327 ----RSVKALNKASMIKLTWHLM 383
               RS+  LN A  +KL W ++
Sbjct: 504 GLGIRSLSQLNAAGNLKLCWDML 526


>gb|ABD32279.2| reverse transcriptase, putative [Medicago truncatula]
          Length = 480

 Score = 90.9 bits (224), Expect = 2e-16
 Identities = 48/97 (49%), Positives = 62/97 (63%)
 Frame = +3

Query: 36  SIPFRYLGVPIFVGKPTKAHLMPLVDKVRSKLTGWQRQRRLLSIMGRAQLVHSVIQNLLL 215
           +IPF YLG PIF GK    +   +VD+++ K   W+    LLSIMGR +LV S+I  +L+
Sbjct: 219 NIPFFYLGCPIFKGKLKGIYFQSIVDRIKVKFAIWKCT--LLSIMGRVELVKSIIHGMLV 276

Query: 216 YSFAICAWPVNLLKKLDS*IRNFIWTGDPEKRMVLTV 326
           YSF I  WP  LL +LDS I+NFIW+GD     V TV
Sbjct: 277 YSFQIYMWPRRLLHQLDSWIKNFIWSGDIYTHKVCTV 313


>gb|ABD28538.2| RNA-directed DNA polymerase , putative [Medicago truncatula]
           gi|124360719|gb|ABD33252.2| RNA-directed DNA polymerase
           , putative [Medicago truncatula]
          Length = 173

 Score = 83.2 bits (204), Expect = 4e-14
 Identities = 40/97 (41%), Positives = 64/97 (65%)
 Frame = +3

Query: 36  SIPFRYLGVPIFVGKPTKAHLMPLVDKVRSKLTGWQRQRRLLSIMGRAQLVHSVIQNLLL 215
           ++PF Y+    F GKP   H  P+ DK ++K+  W+    LLSI GR QLV S +Q++LL
Sbjct: 59  TLPFTYIEAS-FKGKPKCIHFQPIADKFKAKIANWKAS--LLSIAGRVQLVKSDVQSMLL 115

Query: 216 YSFAICAWPVNLLKKLDS*IRNFIWTGDPEKRMVLTV 326
           ++ +I + P+ +L+ ++  I+NFIW+GD  KR ++TV
Sbjct: 116 HTMSIYSCPIKILRDMEKWIKNFIWSGDVTKRKMVTV 152