BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00033680
         (370 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containi...   166   2e-39
ref|XP_002511599.1| pentatricopeptide repeat-containing protein,...   112   4e-23
ref|XP_002531691.1| pentatricopeptide repeat-containing protein,...   111   5e-23
gb|EAZ04842.1| hypothetical protein OsI_27020 [Oryza sativa Indi...   110   2e-22
tpg|DAA48352.1| TPA: hypothetical protein ZEAMMB73_382586 [Zea m...   107   1e-21

>ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  166 bits (419), Expect = 2e-39
 Identities = 78/122 (63%), Positives = 99/122 (81%)
 Frame = -3

Query: 368 ACGRSVDYTSGRRVHTHVVKLGFALDLFVQTALIEMYAKLGTVDVAKNILDEMDQPDMVS 189
           ACGR  D  +G+++HT V+K+G   DLFV+TALIEMYAK G +++A+NILDEM  PD+V 
Sbjct: 114 ACGRLKDPGNGQKLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVP 173

Query: 188 YNVLLAECVRIGKVDLARHLFDKMPARDLVSWNTMIHGFATCGDVDTATQLFDMSSERDL 9
           YNVLLAE VR+G+++LA  LFD+MP RDLVSWNTMIHG A+ GDV TA +LFD + ERDL
Sbjct: 174 YNVLLAEYVRVGEINLAHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDL 233

Query: 8   VS 3
           +S
Sbjct: 234 IS 235


>ref|XP_002511599.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548779|gb|EEF50268.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 429

 Score =  112 bits (279), Expect = 4e-23
 Identities = 50/122 (40%), Positives = 81/122 (66%)
 Frame = -3

Query: 368 ACGRSVDYTSGRRVHTHVVKLGFALDLFVQTALIEMYAKLGTVDVAKNILDEMDQPDMVS 189
           +CG ++    G  +H HV+K+GF LDL+V TAL++MYAK G + +A+ + DEM +  +VS
Sbjct: 97  SCGLNMAVWEGFEIHNHVLKMGFGLDLYVSTALVDMYAKFGELCMARKMFDEMAERGVVS 156

Query: 188 YNVLLAECVRIGKVDLARHLFDKMPARDLVSWNTMIHGFATCGDVDTATQLFDMSSERDL 9
           +  L+  C+R G +  AR LFD+MP +D  ++N M+ G+   GD+++A  LFD    R++
Sbjct: 157 WTALIGGCMRSGDMGNARILFDQMPEKDSAAYNAMLDGYVKAGDMESAQSLFDKMPARNV 216

Query: 8   VS 3
           +S
Sbjct: 217 IS 218


>ref|XP_002531691.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223528667|gb|EEF30682.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 434

 Score =  111 bits (278), Expect = 5e-23
 Identities = 54/121 (44%), Positives = 77/121 (63%)
 Frame = -3

Query: 365 CGRSVDYTSGRRVHTHVVKLGFALDLFVQTALIEMYAKLGTVDVAKNILDEMDQPDMVSY 186
           C R      G+++H  V+KLGF L+ FV ++L+ MY+K   +D AK +   MD  D+VS+
Sbjct: 117 CARLHATKEGKQIHGLVLKLGFGLNKFVSSSLVNMYSKCKDIDSAKKVFLSMDDKDLVSW 176

Query: 185 NVLLAECVRIGKVDLARHLFDKMPARDLVSWNTMIHGFATCGDVDTATQLFDMSSERDLV 6
           N L+   V+ G+V+L   LF++MP RDL SW  +I GF+ CG VD A +LFD    R+LV
Sbjct: 177 NSLIDGYVKCGQVELGMKLFEEMPERDLFSWTVLIDGFSKCGKVDVARELFDKMPSRNLV 236

Query: 5   S 3
           S
Sbjct: 237 S 237



 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 38/94 (40%), Positives = 57/94 (60%)
 Frame = -3

Query: 293 DLFVQTALIEMYAKLGTVDVAKNILDEMDQPDMVSYNVLLAECVRIGKVDLARHLFDKMP 114
           DLF  T LI+ ++K G VDVA+ + D+M   ++VS+N ++   ++ G   LA  LFDKMP
Sbjct: 203 DLFSWTVLIDGFSKCGKVDVARELFDKMPSRNLVSWNAMINGYMKAGDFVLASELFDKMP 262

Query: 113 ARDLVSWNTMIHGFATCGDVDTATQLFDMSSERD 12
            ++L+SWN+M+ G+        A  LF    ERD
Sbjct: 263 EKNLISWNSMVAGYDLNERFKEALDLFLTMLERD 296


>gb|EAZ04842.1| hypothetical protein OsI_27020 [Oryza sativa Indica Group]
          Length = 413

 Score =  110 bits (274), Expect = 2e-22
 Identities = 61/124 (49%), Positives = 80/124 (64%), Gaps = 2/124 (1%)
 Frame = -3

Query: 368 ACGRSVDYTS-GRRVHTHVVKLGFAL-DLFVQTALIEMYAKLGTVDVAKNILDEMDQPDM 195
           ACG +    S G  +H   ++ GFA  DLFV+TAL+EMYAK G VD+A++  DE    D+
Sbjct: 79  ACGSAAAPVSVGAALHARALRSGFAAADLFVRTALVEMYAKAGRVDLARDAFDEAPLRDV 138

Query: 194 VSYNVLLAECVRIGKVDLARHLFDKMPARDLVSWNTMIHGFATCGDVDTATQLFDMSSER 15
              NV+LA  V   +V  AR +FD MP RDLVSWNTMIHG+A  G+V  A ++FD + +R
Sbjct: 139 FLCNVMLAAYVSRSEVAEARKVFDGMPMRDLVSWNTMIHGYAMRGEVGLAREIFDGTEDR 198

Query: 14  DLVS 3
           D  S
Sbjct: 199 DAFS 202


>tpg|DAA48352.1| TPA: hypothetical protein ZEAMMB73_382586 [Zea mays]
          Length = 687

 Score =  107 bits (266), Expect = 1e-21
 Identities = 55/114 (48%), Positives = 73/114 (64%)
 Frame = -3

Query: 344 TSGRRVHTHVVKLGFALDLFVQTALIEMYAKLGTVDVAKNILDEMDQPDMVSYNVLLAEC 165
           T  R  H HVVKLG A D FV  ALI+ Y+K   +  AK + DEM   D+VS+N  +A  
Sbjct: 218 TPVRGAHAHVVKLGSAEDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAM 277

Query: 164 VRIGKVDLARHLFDKMPARDLVSWNTMIHGFATCGDVDTATQLFDMSSERDLVS 3
           VR G+VD AR +FD+MP +D VSWNTM+ G+A  G+ + A +LF     R++VS
Sbjct: 278 VRQGEVDAARSMFDEMPEKDTVSWNTMLDGYAKAGEAEKAFELFQRMPGRNVVS 331