BLASTX nr result
ID: Coptis24_contig00033663
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00033663
(428 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003551787.1| PREDICTED: pentatricopeptide repeat-containi... 92 6e-17
ref|XP_003530462.1| PREDICTED: pentatricopeptide repeat-containi... 91 1e-16
ref|XP_002878586.1| pentatricopeptide repeat-containing protein ... 90 2e-16
ref|NP_179798.1| pentatricopeptide repeat-containing protein [Ar... 89 5e-16
emb|CBI22025.3| unnamed protein product [Vitis vinifera] 88 8e-16
>ref|XP_003551787.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Glycine max]
Length = 852
Score = 91.7 bits (226), Expect = 6e-17
Identities = 50/134 (37%), Positives = 81/134 (60%), Gaps = 4/134 (2%)
Frame = +1
Query: 1 FDEMPERNVVSWNAMIAAYVHNGKEVDGLELFYTMKCVEFVVPDEFA-FATVLTGCARVS 177
FD MPER+VVSWN++++ Y+HNG +E+F M+ ++ +P ++A FA +L C+ +
Sbjct: 95 FDSMPERDVVSWNSLLSCYLHNGVNRKSIEIFVRMRSLK--IPHDYATFAVILKACSGIE 152
Query: 178 ELKLGMQIHAGVLVVGFEIECVL--AVCNMYLRCGEVSFAERFLRERGE-NATLKVLMIK 348
+ LG+Q+H + +GFE + V A+ +MY +C ++ A R RE E N +I
Sbjct: 153 DYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDDAFRVFREMPERNLVCWSAVIA 212
Query: 349 GYVSNKRCDDALRL 390
GYV N R + L+L
Sbjct: 213 GYVQNDRFIEGLKL 226
Score = 70.9 bits (172), Expect = 1e-10
Identities = 44/132 (33%), Positives = 72/132 (54%), Gaps = 3/132 (2%)
Frame = +1
Query: 1 FDEMPERNVVSWNAMIAAYVHNGKEVDGLELFYTMKCVEFVVPDEFAFATVLTGCARVSE 180
F+EM R+ VSWNA+IAA+ N + V L LF +M + PD+F + +V+ CA
Sbjct: 398 FEEMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSM-LRSTMEPDDFTYGSVVKACAGQQA 456
Query: 181 LKLGMQIHAGVLVVGFEIECVL--AVCNMYLRCGEVSFAERFLRERGENATLK-VLMIKG 351
L G +IH ++ G ++ + A+ +MY +CG + AE+ E T+ +I G
Sbjct: 457 LNYGTEIHGRIIKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHARLEEKTTVSWNSIISG 516
Query: 352 YVSNKRCDDALR 387
+ S K+ ++A R
Sbjct: 517 FSSQKQSENAQR 528
Score = 70.1 bits (170), Expect = 2e-10
Identities = 38/93 (40%), Positives = 55/93 (59%), Gaps = 2/93 (2%)
Frame = +1
Query: 1 FDEMPERNVVSWNAMIAAYVHNGKEVDGLELFYTMKCVEFVVPDEFAFATVLTGCARVSE 180
F EMPERN+V W+A+IA YV N + ++GL+LF M V V + +A+V CA +S
Sbjct: 196 FREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGV-SQSTYASVFRSCAGLSA 254
Query: 181 LKLGMQIHAGVLVVGFEIECVL--AVCNMYLRC 273
KLG Q+H L F + ++ A +MY +C
Sbjct: 255 FKLGTQLHGHALKSDFAYDSIIGTATLDMYAKC 287
Score = 58.5 bits (140), Expect = 5e-07
Identities = 27/93 (29%), Positives = 56/93 (60%), Gaps = 2/93 (2%)
Frame = +1
Query: 10 MPERNVVSWNAMIAAYVHNGKEVDGLELFYTMKCVEFVVPDEFAFATVLTGCARVSELKL 189
+ E+ VSWN++I+ + + K+ + + +++ ++PD + +ATVL CA ++ ++L
Sbjct: 502 LEEKTTVSWNSIISGF-SSQKQSENAQRYFSQMLEMGIIPDNYTYATVLDVCANMATIEL 560
Query: 190 GMQIHAGVLVVGFEIECVLA--VCNMYLRCGEV 282
G QIHA +L + + +A + +MY +CG +
Sbjct: 561 GKQIHAQILKLQLHSDVYIASTLVDMYSKCGNM 593
>ref|XP_003530462.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Glycine max]
Length = 852
Score = 90.9 bits (224), Expect = 1e-16
Identities = 50/134 (37%), Positives = 81/134 (60%), Gaps = 4/134 (2%)
Frame = +1
Query: 1 FDEMPERNVVSWNAMIAAYVHNGKEVDGLELFYTMKCVEFVVPDEFA-FATVLTGCARVS 177
FD MPER+VVSWN++++ Y+HNG +E+F M+ ++ +P ++A F+ VL C+ +
Sbjct: 95 FDTMPERDVVSWNSLLSCYLHNGVNRKSIEIFVRMRSLK--IPHDYATFSVVLKACSGIE 152
Query: 178 ELKLGMQIHAGVLVVGFEIECVL--AVCNMYLRCGEVSFAERFLRERGE-NATLKVLMIK 348
+ LG+Q+H + +GFE + V A+ +MY +C ++ A R RE E N +I
Sbjct: 153 DYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDGAFRIFREMPERNLVCWSAVIA 212
Query: 349 GYVSNKRCDDALRL 390
GYV N R + L+L
Sbjct: 213 GYVQNDRFIEGLKL 226
Score = 72.8 bits (177), Expect = 3e-11
Identities = 45/132 (34%), Positives = 73/132 (55%), Gaps = 3/132 (2%)
Frame = +1
Query: 1 FDEMPERNVVSWNAMIAAYVHNGKEVDGLELFYTMKCVEFVVPDEFAFATVLTGCARVSE 180
FD+M R+ VSWNA+IAA+ N + V L LF +M + PD+F + +V+ CA
Sbjct: 398 FDDMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSM-LRSTMEPDDFTYGSVVKACAGQQA 456
Query: 181 LKLGMQIHAGVLVVGFEIECVL--AVCNMYLRCGEVSFAERFLRERGENATLK-VLMIKG 351
L GM+IH ++ G ++ + A+ +MY +CG + AE+ E T+ +I G
Sbjct: 457 LNYGMEIHGRIVKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHDRLEEKTTVSWNSIISG 516
Query: 352 YVSNKRCDDALR 387
+ S K+ ++A R
Sbjct: 517 FSSQKQSENAQR 528
Score = 72.0 bits (175), Expect = 5e-11
Identities = 40/99 (40%), Positives = 58/99 (58%), Gaps = 2/99 (2%)
Frame = +1
Query: 1 FDEMPERNVVSWNAMIAAYVHNGKEVDGLELFYTMKCVEFVVPDEFAFATVLTGCARVSE 180
F EMPERN+V W+A+IA YV N + ++GL+LF M V V + +A+V CA +S
Sbjct: 196 FREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGV-SQSTYASVFRSCAGLSA 254
Query: 181 LKLGMQIHAGVLVVGFEIECVL--AVCNMYLRCGEVSFA 291
KLG Q+H L F + ++ A +MY +C +S A
Sbjct: 255 FKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDA 293
Score = 63.2 bits (152), Expect = 2e-08
Identities = 30/95 (31%), Positives = 57/95 (60%), Gaps = 2/95 (2%)
Frame = +1
Query: 4 DEMPERNVVSWNAMIAAYVHNGKEVDGLELFYTMKCVEFVVPDEFAFATVLTGCARVSEL 183
D + E+ VSWN++I+ + + K+ + + +++ V+PD F +ATVL CA ++ +
Sbjct: 500 DRLEEKTTVSWNSIISGF-SSQKQSENAQRYFSQMLEMGVIPDNFTYATVLDVCANMATI 558
Query: 184 KLGMQIHAGVLVVGFEIECVLA--VCNMYLRCGEV 282
+LG QIHA +L + + +A + +MY +CG +
Sbjct: 559 ELGKQIHAQILKLNLHSDVYIASTLVDMYSKCGNM 593
>ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297324425|gb|EFH54845.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 786
Score = 89.7 bits (221), Expect = 2e-16
Identities = 45/122 (36%), Positives = 75/122 (61%), Gaps = 2/122 (1%)
Frame = +1
Query: 1 FDEMPERNVVSWNAMIAAYVHNGKEVDGLELFYTMKCVEFVVPDEFAFATVLTGCARVSE 180
F++M ER++V+WN+MI+ Y G ++ L++F M + PD F A+VL+ CA + +
Sbjct: 235 FEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEK 294
Query: 181 LKLGMQIHAGVLVVGFEIECVL--AVCNMYLRCGEVSFAERFLRERGENATLKVLMIKGY 354
L +G QIH+ ++ GF+I ++ A+ +MY RCG V A R + +RG K L I+G+
Sbjct: 295 LCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRG----TKDLKIEGF 350
Query: 355 VS 360
+
Sbjct: 351 TA 352
>ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At2g22070 gi|4587589|gb|AAD25817.1| hypothetical protein
[Arabidopsis thaliana] gi|330252165|gb|AEC07259.1|
pentatricopeptide repeat-containing protein [Arabidopsis
thaliana]
Length = 786
Score = 88.6 bits (218), Expect = 5e-16
Identities = 44/122 (36%), Positives = 75/122 (61%), Gaps = 2/122 (1%)
Frame = +1
Query: 1 FDEMPERNVVSWNAMIAAYVHNGKEVDGLELFYTMKCVEFVVPDEFAFATVLTGCARVSE 180
F++M ER++V+WN+MI+ + G ++ L++F M + PD F A+VL+ CA + +
Sbjct: 235 FEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEK 294
Query: 181 LKLGMQIHAGVLVVGFEIECVL--AVCNMYLRCGEVSFAERFLRERGENATLKVLMIKGY 354
L +G QIH+ ++ GF+I ++ A+ +MY RCG V A R + +RG K L I+G+
Sbjct: 295 LCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRG----TKDLKIEGF 350
Query: 355 VS 360
+
Sbjct: 351 TA 352
>emb|CBI22025.3| unnamed protein product [Vitis vinifera]
Length = 489
Score = 87.8 bits (216), Expect = 8e-16
Identities = 51/131 (38%), Positives = 72/131 (54%), Gaps = 3/131 (2%)
Frame = +1
Query: 1 FDEMPERNVVSWNAMIAAYVHNGKEVDGLELFYTMKCVEFVVPDEFAFATVLTGCARVSE 180
FDEMPERNV +WNAM+A + +GL LF M + F +PDEFA +VL GCA +
Sbjct: 141 FDEMPERNVATWNAMVAGLIQFEFNEEGLGLFSRMNELGF-LPDEFALGSVLRGCAGLRA 199
Query: 181 LKLGMQIHAGVLVVGFEIECVL--AVCNMYLRCGEVSFAERFLRER-GENATLKVLMIKG 351
L G Q+H V GFE V+ ++ +MY++CG + ER +R +N +I G
Sbjct: 200 LVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMKCGSLGEGERLIRAMPSQNVVAWNTLIAG 259
Query: 352 YVSNKRCDDAL 384
N ++ L
Sbjct: 260 RAQNGYPEEVL 270
Score = 65.5 bits (158), Expect = 4e-09
Identities = 41/130 (31%), Positives = 68/130 (52%), Gaps = 3/130 (2%)
Frame = +1
Query: 10 MPERNVVSWNAMIAAYVHNGKEVDGLELFYTMKCVEFVVPDEFAFATVLTGCARVSELKL 189
MP +NVV+WN +IA NG + L+ + MK F PD+ F +V++ C+ ++ L
Sbjct: 245 MPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGF-RPDKITFVSVISSCSELATLGQ 303
Query: 190 GMQIHAGVLVVGFE--IECVLAVCNMYLRCGEVSFAER-FLRERGENATLKVLMIKGYVS 360
G QIHA V+ G + + ++ +MY RCG + ++ + FL + MI Y
Sbjct: 304 GQQIHAEVIKAGASLIVSVISSLISMYSRCGCLEYSLKVFLECENGDVVCWSSMIAAYGF 363
Query: 361 NKRCDDALRL 390
+ R +A+ L
Sbjct: 364 HGRGVEAIDL 373