BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00033614
         (641 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containi...   316   3e-84
ref|XP_002438055.1| hypothetical protein SORBIDRAFT_10g007350 [S...   200   2e-49
ref|NP_001057146.1| Os06g0216400 [Oryza sativa Japonica Group] g...   199   3e-49
ref|XP_003564095.1| PREDICTED: pentatricopeptide repeat-containi...   198   8e-49
gb|EEC80230.1| hypothetical protein OsI_22164 [Oryza sativa Indi...   196   3e-48

>ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score =  316 bits (809), Expect = 3e-84
 Identities = 148/211 (70%), Positives = 174/211 (82%)
 Frame = -2

Query: 634 AKKLFDDMPERDVVACNAMISALGMHGYLNEGRELFDRMREKTSSSWNTMISCYCKLGDV 455
           AK++F  MP RDVVA NAMISAL  HGY+ E R LFD M E+ S SWN+MI+CYCKLGD+
Sbjct: 64  AKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNMTERNSCSWNSMITCYCKLGDI 123

Query: 454 ESARMLFDSNPVKNVISWNAMIDGYCKLNQFSIARELFDHMGFLKNTVTWNTMISGYVQH 275
            SAR++FD NPVK+V+SWNA+IDGYCK  Q   A+ELF  MG  +N+VTWNTMIS YVQ 
Sbjct: 124 NSARLMFDCNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMISAYVQC 183

Query: 274 REFGRAISTFQDMQAESVKPTVETMVSLLSACAHLGALDMGYWIHGYIRRQKLKVDVYLG 95
            EFG AIS FQ MQ+E+VKPT  TMVSLLSACAHLGALDMG WIHGYIR ++LK+DV LG
Sbjct: 184 GEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLG 243

Query: 94  NALVDMYCKCGSIESALDVFHRLSVKNVFCW 2
           NAL+DMYCKCG++E+A+DVFH LS KN+FCW
Sbjct: 244 NALIDMYCKCGALEAAIDVFHGLSRKNIFCW 274



 Score = 84.7 bits (208), Expect = 1e-14
 Identities = 68/249 (27%), Positives = 107/249 (42%), Gaps = 41/249 (16%)
 Frame = -2

Query: 640 SSAKKLFDDMPERDVVACNAMISALGMHGYLNEGRELFDRMRE-KTSSSWNTMISCYCKL 464
           +SA+ +FD  P +DVV+ NA+I        L   +ELF  M   + S +WNTMIS Y + 
Sbjct: 124 NSARLMFDCNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMISAYVQC 183

Query: 463 GDVESARMLFDSNPVKNV---------------------------------------ISW 401
           G+  +A  +F     +NV                                       +  
Sbjct: 184 GEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLG 243

Query: 400 NAMIDGYCKLNQFSIARELFDHMGFLKNTVTWNTMISGYVQHREFGRAISTFQDMQAESV 221
           NA+ID YCK      A ++F  +   KN   WN++I G   +     AI+ F  M+ E +
Sbjct: 244 NALIDMYCKCGALEAAIDVFHGLS-RKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGI 302

Query: 220 KPTVETMVSLLSACAHLGALDMGY-WIHGYIRRQKLKVDVYLGNALVDMYCKCGSIESAL 44
           KP   T V +LS C+H G L  G  +    +    L+  V     +VD+  + G ++ AL
Sbjct: 303 KPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEAL 362

Query: 43  DVFHRLSVK 17
           ++   + +K
Sbjct: 363 ELIRAMPMK 371


>ref|XP_002438055.1| hypothetical protein SORBIDRAFT_10g007350 [Sorghum bicolor]
           gi|241916278|gb|EER89422.1| hypothetical protein
           SORBIDRAFT_10g007350 [Sorghum bicolor]
          Length = 587

 Score =  200 bits (508), Expect = 2e-49
 Identities = 103/224 (45%), Positives = 150/224 (66%), Gaps = 13/224 (5%)
 Frame = -2

Query: 634 AKKLFDDMPERDVVACNAMISALGMHGYLNEGRELFDRMREKTSSSWNTMISCYCKLGDV 455
           A+++FD+MP RDVVA NAM++ALG  G + + R LF RM  +T +SWNTM++CYC+ GD+
Sbjct: 61  AQRVFDEMPRRDVVAINAMLAALGATGRVTDARALFGRMSYRTPASWNTMVTCYCRAGDL 120

Query: 454 ESARMLFDSN---PVKNVISWNAMIDGYCKLNQFSIARELFDHMG-FLKNTVTWNTMISG 287
            SAR +F+++      +V+SWNAMIDGYCK  +   ARELFD MG  L + +TWNTM++G
Sbjct: 121 TSARDVFEASLRAMSSSVVSWNAMIDGYCKAGRMDAARELFDRMGSSLPDVITWNTMMAG 180

Query: 286 YVQHREFGRAISTF------QDMQAESVKPTVETMVSLLSACAHLGALDMGYWIHGYIRR 125
           Y++  +   AI+ F      Q    + ++PT  TM ++++ACA +G L +G  IH  I++
Sbjct: 181 YLRGGDPASAIAMFHLLMRTQREGEQRLRPTNGTMATVVAACAQVGNLALGRQIHHLIQQ 240

Query: 124 QKLKVDVYLGNALVDMYCKCGSIESALDVFH---RLSVKNVFCW 2
           + + +D  L NAL+DMY K GS++ ALDVF    R    N+FCW
Sbjct: 241 KGIWIDTVLSNALMDMYFKSGSVDCALDVFRAMPRPRSPNLFCW 284



 Score = 65.5 bits (158), Expect = 8e-09
 Identities = 66/241 (27%), Positives = 96/241 (39%), Gaps = 57/241 (23%)
 Frame = -2

Query: 598 VVACNAMISALGMHGYLNEGRELFDRMREKTSS--SWNTMISCYCKLGDVESARMLFD-- 431
           VV+ NAMI      G ++  RELFDRM        +WNTM++ Y + GD  SA  +F   
Sbjct: 138 VVSWNAMIDGYCKAGRMDAARELFDRMGSSLPDVITWNTMMAGYLRGGDPASAIAMFHLL 197

Query: 430 --------------SNPVKNVIS-----------------------W------NAMIDGY 380
                         +  +  V++                       W      NA++D Y
Sbjct: 198 MRTQREGEQRLRPTNGTMATVVAACAQVGNLALGRQIHHLIQQKGIWIDTVLSNALMDMY 257

Query: 379 CKLNQFSIARELFDHMGFLK--NTVTWNTMISGYVQHREFGRAISTFQDM-------QAE 227
            K      A ++F  M   +  N   WNT+ISG   +     AI+ F DM          
Sbjct: 258 FKSGSVDCALDVFRAMPRPRSPNLFCWNTVISGLGMNGHGEDAIAAFHDMVEGRGRLNGN 317

Query: 226 SVKPTVETMVSLLSACAHLG-ALDMGYWIHGYIRRQKLKVDVYLGNALVDMYCKCGSIES 50
           SVKP   T V+LLSAC+H G  L+   +    +    L         +VD+ C+ G ++ 
Sbjct: 318 SVKPDGVTFVALLSACSHSGLVLEARKFFSQMLPVYGLPPQPEHYGCMVDLLCRAGHVDE 377

Query: 49  A 47
           A
Sbjct: 378 A 378


>ref|NP_001057146.1| Os06g0216400 [Oryza sativa Japonica Group]
           gi|51090406|dbj|BAD35328.1| pentatricopeptide (PPR)
           repeat-containing protein-like [Oryza sativa Japonica
           Group] gi|51091140|dbj|BAD35836.1| pentatricopeptide
           (PPR) repeat-containing protein-like [Oryza sativa
           Japonica Group] gi|113595186|dbj|BAF19060.1|
           Os06g0216400 [Oryza sativa Japonica Group]
           gi|215715231|dbj|BAG94982.1| unnamed protein product
           [Oryza sativa Japonica Group]
           gi|222635200|gb|EEE65332.1| hypothetical protein
           OsJ_20596 [Oryza sativa Japonica Group]
          Length = 474

 Score =  199 bits (507), Expect = 3e-49
 Identities = 100/227 (44%), Positives = 147/227 (64%), Gaps = 16/227 (7%)
 Frame = -2

Query: 634 AKKLFDDMPERDVVACNAMISALGMHGYLNEGRELFDRMREKTSSSWNTMISCYCKLGDV 455
           A++LFD+MP RD VA NAM++AL     + + RELF+RM ++T +SWNTM++CYCK GD+
Sbjct: 61  ARRLFDEMPRRDAVAFNAMLAALVASRRMADARELFERMPDRTPASWNTMVTCYCKAGDL 120

Query: 454 ESARMLFDSN---PVKNVISWNAMIDGYCKLNQFSIARELFDHMGF------LKNTVTWN 302
            SAR +F+++      NV+SWN MIDGYCK  +   A+ELFD MG         + VTWN
Sbjct: 121 GSAREVFEASLGATASNVVSWNTMIDGYCKAGRMDAAQELFDCMGCSFSSSPSPDVVTWN 180

Query: 301 TMISGYVQHREFGRAISTFQDMQAESVK------PTVETMVSLLSACAHLGALDMGYWIH 140
           TM++GY++  +   AI+ F+ +  ++V+      PT  T+ ++++AC   G    G  +H
Sbjct: 181 TMMAGYLRRGDPATAIAMFRRLMRQTVQQQTLMMPTTVTIATVVTACTQAGDFAFGRRVH 240

Query: 139 GYIRRQKLKVDVYLGNALVDMYCKCGSIESALDVFHRL-SVKNVFCW 2
            YIR+   ++D  L NAL+DMY KCGS++ ALDVF  +    N+FCW
Sbjct: 241 HYIRQLGTRIDAVLSNALIDMYFKCGSVDRALDVFATMPDGPNLFCW 287



 Score = 62.4 bits (150), Expect = 7e-08
 Identities = 70/276 (25%), Positives = 109/276 (39%), Gaps = 69/276 (25%)
 Frame = -2

Query: 637 SAKKLFD---DMPERDVVACNAMISALGMHGYLNEGRELFDRMREKTSSS-------WNT 488
           SA+++F+        +VV+ N MI      G ++  +ELFD M    SSS       WNT
Sbjct: 122 SAREVFEASLGATASNVVSWNTMIDGYCKAGRMDAAQELFDCMGCSFSSSPSPDVVTWNT 181

Query: 487 MISCYCKLGDVESARMLFD----------------------------------------- 431
           M++ Y + GD  +A  +F                                          
Sbjct: 182 MMAGYLRRGDPATAIAMFRRLMRQTVQQQTLMMPTTVTIATVVTACTQAGDFAFGRRVHH 241

Query: 430 -----SNPVKNVISWNAMIDGYCKLNQFSIARELFDHMGFLKNTVTWNTMISGYVQHREF 266
                   +  V+S NA+ID Y K      A ++F  M    N   WNT+I+G   +   
Sbjct: 242 YIRQLGTRIDAVLS-NALIDMYFKCGSVDRALDVFATMPDGPNLFCWNTVIAGLGMNGRG 300

Query: 265 GRAISTFQDMQAES------VKPTVETMVSLLSACAHLGALDMG-------YWIHGYIRR 125
             A+  F DM   S      ++P   T V+LLSAC+H G +  G         +HG   R
Sbjct: 301 EDAVRAFHDMVGRSRTCRGIIRPDGVTFVALLSACSHSGLVAEGRRFFAEMVPVHGVEPR 360

Query: 124 QKLKVDVYLGNALVDMYCKCGSIESALDVFHRLSVK 17
           ++     + G  +VD+ C+ G +  A+ V   + V+
Sbjct: 361 EE-----HYG-CMVDLLCRAGLLGDAVRVVRAMPVR 390


>ref|XP_003564095.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Brachypodium distachyon]
          Length = 483

 Score =  198 bits (503), Expect = 8e-49
 Identities = 102/221 (46%), Positives = 147/221 (66%), Gaps = 10/221 (4%)
 Frame = -2

Query: 634 AKKLFDDMPERDVVACNAMISALGMHGYLNEGRELFDRM--REKTSSSWNTMISCYCKLG 461
           A++LFD+M  RD +A NAM++ALG  G   + R LFDRM   ++T +SWNT+++CYC+ G
Sbjct: 61  AQRLFDEMTRRDSIAFNAMLAALGASGRTADARRLFDRMPDADRTPASWNTVLTCYCRAG 120

Query: 460 DVESARMLFDSN---PVKNVISWNAMIDGYCKLNQFSIARELFDHM--GFLKNTVTWNTM 296
           D+ SAR +FD++      +++SWNAMIDGYCK  +   A+ELFD M     ++ VTWNTM
Sbjct: 121 DLASAREVFDASLRATTSSLVSWNAMIDGYCKAGRMDAAQELFDRMTGSSPRDVVTWNTM 180

Query: 295 ISGYVQHREFGRAISTFQD-MQAESVKPTVETMVSLLSACAHLGALDMGYWIHGYIRRQK 119
           ++GY++  +   AI+ F+  MQ ++++PT  TM + +SACA  G L +G  IH  IRR  
Sbjct: 181 MAGYLRRGDPAAAIAMFRRLMQQQTLRPTTVTMATAVSACAQAGDLALGREIHLSIRRLG 240

Query: 118 LKVDVYLGNALVDMYCKCGSIESALDVFHRL--SVKNVFCW 2
              D  L NAL+DMY KCGS++ AL+VF  +     N+FCW
Sbjct: 241 TTADAVLSNALIDMYFKCGSVDRALEVFVTMPGGAPNLFCW 281



 Score = 73.9 bits (180), Expect = 2e-11
 Identities = 68/232 (29%), Positives = 106/232 (45%), Gaps = 25/232 (10%)
 Frame = -2

Query: 637 SAKKLFDDMP---ERDVVACNAMISALGMHGYLNEGRE-----LFDRMREK-----TSSS 497
           +A++LFD M     RDVV  N M     M GYL  G       +F R+ ++     T+ +
Sbjct: 158 AAQELFDRMTGSSPRDVVTWNTM-----MAGYLRRGDPAAAIAMFRRLMQQQTLRPTTVT 212

Query: 496 WNTMISCYCKLGDVESARMLFDS----NPVKNVISWNAMIDGYCKLNQFSIARELFDHM- 332
             T +S   + GD+   R +  S        + +  NA+ID Y K      A E+F  M 
Sbjct: 213 MATAVSACAQAGDLALGREIHLSIRRLGTTADAVLSNALIDMYFKCGSVDRALEVFVTMP 272

Query: 331 GFLKNTVTWNTMISGYVQHREFGRAISTFQDMQAESVKPTVETMVSLLSACAHLGALDMG 152
           G   N   WNT+I+G  ++     A+  F+DM  + VKP   T V++LSAC+H G +  G
Sbjct: 273 GGAPNLFCWNTLIAGLGRNSRGEDAVRAFRDMVEKVVKPDAVTFVAVLSACSHSGLVAEG 332

Query: 151 -------YWIHGYIRRQKLKVDVYLGNALVDMYCKCGSIESALDVFHRLSVK 17
                    +HG   R +     + G  +VD+ C+ G +  A  +   + V+
Sbjct: 333 RELFAEMLPVHGVAPRME-----HYG-CMVDLLCRAGLLGEATRLVRAMPVR 378


>gb|EEC80230.1| hypothetical protein OsI_22164 [Oryza sativa Indica Group]
          Length = 457

 Score =  196 bits (498), Expect = 3e-48
 Identities = 98/227 (43%), Positives = 146/227 (64%), Gaps = 16/227 (7%)
 Frame = -2

Query: 634 AKKLFDDMPERDVVACNAMISALGMHGYLNEGRELFDRMREKTSSSWNTMISCYCKLGDV 455
           A++LFD+MP RD VA NAM++AL     + + RELF+RM ++T +SWNTM++CYCK GD+
Sbjct: 61  ARRLFDEMPRRDAVAFNAMLAALVASRRMADARELFERMPDRTPASWNTMVTCYCKAGDL 120

Query: 454 ESARMLFDSN---PVKNVISWNAMIDGYCKLNQFSIARELFDHMGF------LKNTVTWN 302
            SAR +F+++      NV+SWN MIDGYCK  +   A+ELFD MG         + VTWN
Sbjct: 121 GSAREVFEASLGATASNVVSWNTMIDGYCKAGRMDAAQELFDCMGCSFSSSPSPDVVTWN 180

Query: 301 TMISGYVQHREFGRAISTFQDMQAESVK------PTVETMVSLLSACAHLGALDMGYWIH 140
           TM++GY++  +   A++ F+ +  ++V+      PT  T+ ++++AC   G    G  +H
Sbjct: 181 TMMAGYLRRGDPATALAMFRRLMRQTVQQQTLMMPTTVTIATVVTACTQAGDFAFGRRVH 240

Query: 139 GYIRRQKLKVDVYLGNALVDMYCKCGSIESALDVFHRL-SVKNVFCW 2
            YI +   ++D  L NAL+DMY KCGS++ ALDVF  +    N+FCW
Sbjct: 241 HYIPQLGTRIDAVLSNALIDMYFKCGSVDRALDVFATMPDGPNLFCW 287