BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00033503
         (270 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002510773.1| ATP-dependent RNA helicase, putative [Ricinu...   170   1e-40
ref|XP_002331832.1| predicted protein [Populus trichocarpa] gi|2...   170   1e-40
ref|XP_002318357.1| predicted protein [Populus trichocarpa] gi|2...   168   4e-40
ref|XP_003632558.1| PREDICTED: probable pre-mRNA-splicing factor...   167   6e-40
ref|XP_002268542.1| PREDICTED: probable pre-mRNA-splicing factor...   167   6e-40

>ref|XP_002510773.1| ATP-dependent RNA helicase, putative [Ricinus communis]
            gi|223551474|gb|EEF52960.1| ATP-dependent RNA helicase,
            putative [Ricinus communis]
          Length = 1177

 Score =  170 bits (431), Expect = 1e-40
 Identities = 84/89 (94%), Positives = 86/89 (96%)
 Frame = -2

Query: 269  RTGPGKCYRLYTESAYHNEMSHTSIPEIQRINLGFTTLTMKAMGINDLLSFDFMDPPSPQ 90
            RTGPGKCYRLYTESAY NEMS TSIPEIQRINLGFTTLTMKAMGINDLLSFDFMDPPSPQ
Sbjct: 852  RTGPGKCYRLYTESAYRNEMSPTSIPEIQRINLGFTTLTMKAMGINDLLSFDFMDPPSPQ 911

Query: 89   ALISAMEQLYSLGALDDEGLLTNLGKKMA 3
            ALISAMEQLYSLGALD+EGLLT LG+KMA
Sbjct: 912  ALISAMEQLYSLGALDEEGLLTKLGRKMA 940


>ref|XP_002331832.1| predicted protein [Populus trichocarpa] gi|222875070|gb|EEF12201.1|
            predicted protein [Populus trichocarpa]
          Length = 1171

 Score =  170 bits (431), Expect = 1e-40
 Identities = 84/89 (94%), Positives = 86/89 (96%)
 Frame = -2

Query: 269  RTGPGKCYRLYTESAYHNEMSHTSIPEIQRINLGFTTLTMKAMGINDLLSFDFMDPPSPQ 90
            RTGPGKCYRLYTESAY NEMS TSIPEIQRINLGFTTLTMKAMGINDLLSFDFMDPPSPQ
Sbjct: 846  RTGPGKCYRLYTESAYRNEMSPTSIPEIQRINLGFTTLTMKAMGINDLLSFDFMDPPSPQ 905

Query: 89   ALISAMEQLYSLGALDDEGLLTNLGKKMA 3
            ALISAMEQLYSLGALD+EGLLT LG+KMA
Sbjct: 906  ALISAMEQLYSLGALDEEGLLTKLGRKMA 934


>ref|XP_002318357.1| predicted protein [Populus trichocarpa] gi|222859030|gb|EEE96577.1|
            predicted protein [Populus trichocarpa]
          Length = 1207

 Score =  168 bits (426), Expect = 4e-40
 Identities = 81/89 (91%), Positives = 86/89 (96%)
 Frame = -2

Query: 269  RTGPGKCYRLYTESAYHNEMSHTSIPEIQRINLGFTTLTMKAMGINDLLSFDFMDPPSPQ 90
            RTGPGKCYRLYTESAY NEMS TS+PEIQR+NLGFTTLTMKAMGINDLLSFDFMDPPSPQ
Sbjct: 882  RTGPGKCYRLYTESAYRNEMSPTSVPEIQRVNLGFTTLTMKAMGINDLLSFDFMDPPSPQ 941

Query: 89   ALISAMEQLYSLGALDDEGLLTNLGKKMA 3
            ALISA+EQLYSLGALD+EGLLT LG+KMA
Sbjct: 942  ALISALEQLYSLGALDEEGLLTKLGRKMA 970


>ref|XP_003632558.1| PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA
            helicase-like [Vitis vinifera]
          Length = 1172

 Score =  167 bits (424), Expect = 6e-40
 Identities = 82/89 (92%), Positives = 85/89 (95%)
 Frame = -2

Query: 269  RTGPGKCYRLYTESAYHNEMSHTSIPEIQRINLGFTTLTMKAMGINDLLSFDFMDPPSPQ 90
            RTGPGKCYRLYTESAY NEMS TS+PEIQRINLG TTLTMKAMGINDLLSFDFMDPPSPQ
Sbjct: 847  RTGPGKCYRLYTESAYRNEMSPTSVPEIQRINLGLTTLTMKAMGINDLLSFDFMDPPSPQ 906

Query: 89   ALISAMEQLYSLGALDDEGLLTNLGKKMA 3
            ALISAMEQLYSLGALD+EGLLT LG+KMA
Sbjct: 907  ALISAMEQLYSLGALDEEGLLTKLGRKMA 935


>ref|XP_002268542.1| PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA
            helicase-like isoform 2 [Vitis vinifera]
          Length = 1175

 Score =  167 bits (424), Expect = 6e-40
 Identities = 82/89 (92%), Positives = 85/89 (95%)
 Frame = -2

Query: 269  RTGPGKCYRLYTESAYHNEMSHTSIPEIQRINLGFTTLTMKAMGINDLLSFDFMDPPSPQ 90
            RTGPGKCYRLYTESAY NEMS TS+PEIQRINLG TTLTMKAMGINDLLSFDFMDPPSPQ
Sbjct: 850  RTGPGKCYRLYTESAYRNEMSPTSVPEIQRINLGLTTLTMKAMGINDLLSFDFMDPPSPQ 909

Query: 89   ALISAMEQLYSLGALDDEGLLTNLGKKMA 3
            ALISAMEQLYSLGALD+EGLLT LG+KMA
Sbjct: 910  ALISAMEQLYSLGALDEEGLLTKLGRKMA 938