BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00033401
         (469 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265876.1| PREDICTED: pentatricopeptide repeat-containi...   133   2e-29
emb|CAN79718.1| hypothetical protein VITISV_012741 [Vitis vinifera]   101   7e-20
ref|XP_002511816.1| pentatricopeptide repeat-containing protein,...   100   9e-20
ref|XP_002331436.1| predicted protein [Populus trichocarpa] gi|2...    98   6e-19
gb|ABA18111.1| pentatricopeptide repeat protein [Arabidopsis are...    92   6e-17

>ref|XP_002265876.1| PREDICTED: pentatricopeptide repeat-containing protein At3g42630
           [Vitis vinifera] gi|297736023|emb|CBI24061.3| unnamed
           protein product [Vitis vinifera]
          Length = 423

 Score =  133 bits (334), Expect = 2e-29
 Identities = 70/130 (53%), Positives = 84/130 (64%), Gaps = 17/130 (13%)
 Frame = -1

Query: 343 WKQNESVTGEDYYLDFASPMSMLGSKEIPCYA-----------------TLSTLMLRFAD 215
           WKQ  SV G+D Y+D+   +  L  K +P  A                 TLS LML +AD
Sbjct: 43  WKQERSVDGKDNYVDYTPLIQALSRKRLPHVAQELLFEMKSEGFLPNNSTLSALMLCYAD 102

Query: 214 KKLFSQARAIWDEIINSSFVPNIKVVSHLMDAYGKMGHFDEVVRILHEVISRDFSLCSEA 35
             LF +A+A+WDEIINSSF PNI++VS L+DAYGKMGHF EV RILH+V SRDF+   E 
Sbjct: 103 NGLFPKAQALWDEIINSSFGPNIQIVSKLIDAYGKMGHFGEVTRILHQVSSRDFNFMHEV 162

Query: 34  YSSAISCFGK 5
           YS AISCFGK
Sbjct: 163 YSLAISCFGK 172


>emb|CAN79718.1| hypothetical protein VITISV_012741 [Vitis vinifera]
          Length = 446

 Score =  101 bits (251), Expect = 7e-20
 Identities = 57/128 (44%), Positives = 73/128 (57%), Gaps = 16/128 (12%)
 Frame = -1

Query: 343 WKQNESVTGEDYYLDFASPMSMLGSKEIPCYATLSTLMLRFADKKLFSQARAIWDEIINS 164
           WKQ  SV G+D Y+D+   +  L  K +P  A      ++  D  LF +A+A+WDEIINS
Sbjct: 105 WKQERSVDGKDNYVDYTPLIQALSRKRLPHVAQELLFEMKSEDNGLFPKAQALWDEIINS 164

Query: 163 SFVPNIKVVSHLMDAYGKMGHFDEVVRILH-------------EVISRDF---SLCSEAY 32
           SF PNI++VS L+DAYGKMGHF EV RILH             E++SR F   S    A+
Sbjct: 165 SFGPNIQIVSKLIDAYGKMGHFGEVTRILHQGGQLEMMENALKEMVSRGFPVDSATGNAF 224

Query: 31  SSAISCFG 8
               S FG
Sbjct: 225 IRYYSIFG 232


>ref|XP_002511816.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548996|gb|EEF50485.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 427

 Score =  100 bits (250), Expect = 9e-20
 Identities = 63/151 (41%), Positives = 87/151 (57%), Gaps = 17/151 (11%)
 Frame = -1

Query: 406 IFSSFSHFPKNSSDTKVKIRCWKQNESVTGEDYYLDFASPMSMLGSKEIPCYA------- 248
           +FSS    P N    +  I  WKQ++S + ++  +D AS +  L SK  P  A       
Sbjct: 29  LFSS-QRDPTNRPLARKIIYQWKQDQSFSCKE--VDCASLVQNLHSKRTPHLAQEILLEM 85

Query: 247 ----------TLSTLMLRFADKKLFSQARAIWDEIINSSFVPNIKVVSHLMDAYGKMGHF 98
                     TLS ++L +AD  L  QA+AIW  ++N SF P+I++VS L+DAY K GHF
Sbjct: 86  KSQGYVLNNPTLSAILLCYADNGLLPQAQAIWKHMLNGSFTPSIQIVSRLIDAYSKKGHF 145

Query: 97  DEVVRILHEVISRDFSLCSEAYSSAISCFGK 5
           +EV+ IL ++   +FSL  EAYS AISCFGK
Sbjct: 146 NEVMNILDQLSYSNFSLLHEAYSLAISCFGK 176


>ref|XP_002331436.1| predicted protein [Populus trichocarpa] gi|222873650|gb|EEF10781.1|
           predicted protein [Populus trichocarpa]
          Length = 428

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 59/149 (39%), Positives = 83/149 (55%), Gaps = 18/149 (12%)
 Frame = -1

Query: 397 SFSHFPKNSSDTKVKIRCWKQNESVTGEDYYLDFASPMSMLGSKEIPCYA---------- 248
           S    PK  +  +  IR WK+++ V G++   D AS +  L     P  A          
Sbjct: 29  SIKRDPKKRALAQKMIRQWKRDQGVFGKETCADCASLIQTLCKHRRPHLAEELLLELKCE 88

Query: 247 -------TLSTLMLRFADKKLFSQARAIWDEIINSSFVPNIKVVSHLMDAYGKMGHFDEV 89
                  TLS +ML +AD  L  QA+AIW+E++ SSFVP+++V+S L+D Y K G FDEV
Sbjct: 89  GFLPDNRTLSAMMLCYADSGLLPQAQAIWEEMLYSSFVPSVQVISDLIDIYAKSGLFDEV 148

Query: 88  VRILHEVIS-RDFSLCSEAYSSAISCFGK 5
           ++IL ++ S R F    + YS AISCFGK
Sbjct: 149 IKILDQLSSLRTFDFLPQVYSLAISCFGK 177


>gb|ABA18111.1| pentatricopeptide repeat protein [Arabidopsis arenosa]
          Length = 419

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 46/87 (52%), Positives = 60/87 (68%)
 Frame = -1

Query: 262 IPCYATLSTLMLRFADKKLFSQARAIWDEIINSSFVPNIKVVSHLMDAYGKMGHFDEVVR 83
           +P Y TL  LML FA+     +AR IWDEI+NSSFVP++ VVS L+ AY ++G FDEV +
Sbjct: 83  LPNYRTLCALMLCFAENGFVLRARTIWDEILNSSFVPDVFVVSKLISAYEQLGFFDEVAK 142

Query: 82  ILHEVISRDFSLCSEAYSSAISCFGKS 2
           I  +V +R  +L    YS AISCFGK+
Sbjct: 143 ITKDVAARHSTLLPVVYSLAISCFGKN 169