BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00033306
         (294 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI26593.3| unnamed protein product [Vitis vinifera]               99   5e-19
ref|XP_002276015.1| PREDICTED: pentatricopeptide repeat-containi...    99   5e-19
ref|XP_004148109.1| PREDICTED: pentatricopeptide repeat-containi...    98   8e-19
ref|XP_002307076.1| predicted protein [Populus trichocarpa] gi|2...    98   8e-19
ref|NP_680777.2| pentatricopeptide repeat-containing protein [Ar...    89   5e-16

>emb|CBI26593.3| unnamed protein product [Vitis vinifera]
          Length = 459

 Score = 98.6 bits (244), Expect = 5e-19
 Identities = 49/87 (56%), Positives = 64/87 (73%)
 Frame = -1

Query: 261 NRKNYLTRLFNNLFSNPIPDLKSLLKYHALIITSSHTNNIFISAKLISFYSFYNKPTFST 82
           N  NYL    N+L SN I  LK+LL+ HA IITS ++NNIFI++KLIS Y+ ++KP+ ST
Sbjct: 32  NDFNYL----NHLLSNQISSLKTLLQSHAFIITSGYSNNIFIASKLISLYASFHKPSCST 87

Query: 81  HVFNALEFKDTFLWNSIIKTHFSNGYY 1
            +F+ +  +D FLWNSIIK HFSNG Y
Sbjct: 88  ELFDEIPHRDAFLWNSIIKAHFSNGEY 114


>ref|XP_002276015.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
           mitochondrial-like [Vitis vinifera]
          Length = 744

 Score = 98.6 bits (244), Expect = 5e-19
 Identities = 49/87 (56%), Positives = 64/87 (73%)
 Frame = -1

Query: 261 NRKNYLTRLFNNLFSNPIPDLKSLLKYHALIITSSHTNNIFISAKLISFYSFYNKPTFST 82
           N  NYL    N+L SN I  LK+LL+ HA IITS ++NNIFI++KLIS Y+ ++KP+ ST
Sbjct: 32  NDFNYL----NHLLSNQISSLKTLLQSHAFIITSGYSNNIFIASKLISLYASFHKPSCST 87

Query: 81  HVFNALEFKDTFLWNSIIKTHFSNGYY 1
            +F+ +  +D FLWNSIIK HFSNG Y
Sbjct: 88  ELFDEIPHRDAFLWNSIIKAHFSNGEY 114


>ref|XP_004148109.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
           mitochondrial-like [Cucumis sativus]
          Length = 784

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 42/89 (47%), Positives = 64/89 (71%)
 Frame = -1

Query: 267 STNRKNYLTRLFNNLFSNPIPDLKSLLKYHALIITSSHTNNIFISAKLISFYSFYNKPTF 88
           S +  +Y     ++ FS P    +SLL++H+LIIT+ ++NN+F + KL++FY+++ KP F
Sbjct: 31  SLSDSHYPNNCLHSFFSKPNLTFQSLLQFHSLIITTGNSNNVFFATKLMAFYAYHRKPAF 90

Query: 87  STHVFNALEFKDTFLWNSIIKTHFSNGYY 1
           STH+F  +  KD FLWNSII++HFSNG Y
Sbjct: 91  STHLFRLIHSKDIFLWNSIIQSHFSNGDY 119


>ref|XP_002307076.1| predicted protein [Populus trichocarpa] gi|222856525|gb|EEE94072.1|
           predicted protein [Populus trichocarpa]
          Length = 733

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 48/84 (57%), Positives = 61/84 (72%)
 Frame = -1

Query: 252 NYLTRLFNNLFSNPIPDLKSLLKYHALIITSSHTNNIFISAKLISFYSFYNKPTFSTHVF 73
           NYL    ++  SN    L+SL K HALIIT+ + NN+FIS+KLIS Y+ + KP  ST+VF
Sbjct: 28  NYLNCHIDSFLSNQTQTLQSLHKSHALIITTGNANNVFISSKLISLYASFRKPHSSTYVF 87

Query: 72  NALEFKDTFLWNSIIKTHFSNGYY 1
           ++   KDTFLWNSIIK+HFSNG Y
Sbjct: 88  DSTNQKDTFLWNSIIKSHFSNGNY 111


>ref|NP_680777.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|223635624|sp|Q3E9N1.2|PP359_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At4g39952, mitochondrial; Flags: Precursor
           gi|332661744|gb|AEE87144.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 775

 Score = 88.6 bits (218), Expect = 5e-16
 Identities = 47/101 (46%), Positives = 67/101 (66%), Gaps = 3/101 (2%)
 Frame = -1

Query: 294 LKPNYLV---KPSTNRKNYLTRLFNNLFSNPIPDLKSLLKYHALIITSSHTNNIFISAKL 124
           LKPN +V   K S++  +Y+ R  + +  +    L+SL K++ALIIT   + NIF+++KL
Sbjct: 6   LKPNLVVTLRKLSSSSASYVDRHISVILCDQSLSLESLRKHNALIITGGLSENIFVASKL 65

Query: 123 ISFYSFYNKPTFSTHVFNALEFKDTFLWNSIIKTHFSNGYY 1
           IS Y+ Y KP  S+ VF+ +  +D FLWNSIIK HFSNG Y
Sbjct: 66  ISSYASYGKPNLSSRVFHLVTRRDIFLWNSIIKAHFSNGDY 106