BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00033254
         (605 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus ...    54   7e-08
ref|XP_002297705.1| predicted protein [Populus trichocarpa] gi|2...    57   3e-06

>ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus communis]
           gi|223527546|gb|EEF29668.1| ubiquitin-protein ligase,
           putative [Ricinus communis]
          Length = 389

 Score = 54.3 bits (129), Expect(2) = 7e-08
 Identities = 42/120 (35%), Positives = 60/120 (50%), Gaps = 5/120 (4%)
 Frame = -3

Query: 546 LSIVGFCNGLSCLSDNNTYMALSNPATAENILVSFGLVEQSP---ADYTRISVLGFSHDP 376
           + I+G CNGL C+ +    +AL NP+   + +V +  VE          R+SV GF +D 
Sbjct: 89  VKILGSCNGLLCICNIVDDIALWNPSIRAHRVVPYLPVELKRYFGMCSCRVSVFGFGYDL 148

Query: 375 LIDKYKAVRIDMYGS*RADADFSKAYAQYTLGINAWRRIPS-PYRLCYTG-GVAHLNGAL 202
             D YK VRI  +G     + F      ++L  N+WRRI   PY + Y G    + NGAL
Sbjct: 149 SNDDYKLVRIAQFGGVDRKS-FESEVKVFSLRKNSWRRIADMPYCVLYPGENGIYANGAL 207



 Score = 27.7 bits (60), Expect(2) = 7e-08
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -2

Query: 139 SFISFDVGSEEFRRLPWNIWLGSEVNGRNLGVLQGCLSM 23
           + ++ D+G E++  +P   ++    N   +GVLQGCLS+
Sbjct: 222 TIVALDLGVEDYHVVPKPEFVDMNCN-MGVGVLQGCLSL 259


>ref|XP_002297705.1| predicted protein [Populus trichocarpa] gi|222844963|gb|EEE82510.1|
           predicted protein [Populus trichocarpa]
          Length = 408

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 7/107 (6%)
 Frame = -3

Query: 540 IVGFCNGLSCLSDNNTYMALSNPATAENILVSFGLVE-QSPADYTRISVL----GFSHDP 376
           ++G CNGL  L +++  +AL NP+T E  ++    +E  +  D +++S L    GF HDP
Sbjct: 93  VMGSCNGLLALLNSDFSIALYNPSTREKKMIPVSPLELPNDLDDSKVSSLFNFYGFGHDP 152

Query: 375 LIDKYKAVR-IDMYGS*RADADFSKAYAQYTLGINAWRRIPS-PYRL 241
           + + YK VR I  YG    D  F      Y+L  N+W+RI   PY L
Sbjct: 153 INEDYKVVRFIHFYGD-SPDGFFHCEVKVYSLKSNSWKRIDDYPYDL 198