BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00033048
         (298 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003619167.1| Chlorophyll a-b binding protein 3C-like prot...    88   6e-16
gb|AAA60965.1| light-harvesting chlorophyll a/b binding protein ...    86   2e-15
gb|AAG52048.1|AC022455_2 chlorophyll A-B-binding protein 2 precu...    86   2e-15
ref|NP_174286.1| chlorophyll a-b binding protein 1 [Arabidopsis ...    86   2e-15
gb|AAL38341.1| chlorophyll a/b-binding protein [Arabidopsis thal...    86   2e-15

>ref|XP_003619167.1| Chlorophyll a-b binding protein 3C-like protein [Medicago
           truncatula] gi|355494182|gb|AES75385.1| Chlorophyll a-b
           binding protein 3C-like protein [Medicago truncatula]
          Length = 229

 Score = 88.2 bits (217), Expect = 6e-16
 Identities = 40/41 (97%), Positives = 41/41 (100%)
 Frame = -2

Query: 297 FGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVLGK 175
           FGFFVQAIVTGKGP+ENLADHLADPVNNNAWAFATNFVLGK
Sbjct: 189 FGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVLGK 229


>gb|AAA60965.1| light-harvesting chlorophyll a/b binding protein of photosystem II
           [Ginkgo biloba]
          Length = 270

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 40/41 (97%), Positives = 40/41 (97%)
 Frame = -2

Query: 297 FGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVLGK 175
           FGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFV GK
Sbjct: 230 FGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 270


>gb|AAG52048.1|AC022455_2 chlorophyll A-B-binding protein 2 precursor, 5' partial; 1-750
           [Arabidopsis thaliana]
          Length = 249

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 40/41 (97%), Positives = 40/41 (97%)
 Frame = -2

Query: 297 FGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVLGK 175
           FGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFV GK
Sbjct: 209 FGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 249


>ref|NP_174286.1| chlorophyll a-b binding protein 1 [Arabidopsis thaliana]
           gi|115783|sp|P04778.1|CB1C_ARATH RecName:
           Full=Chlorophyll a-b binding protein 1, chloroplastic;
           AltName: Full=Chlorophyll a-b protein 140;
           Short=CAB-140; AltName: Full=LHCII type I CAB-1; Flags:
           Precursor gi|9972353|gb|AAG10603.1|AC008030_3 Putative
           chlorophyll a/b-binding protein [Arabidopsis thaliana]
           gi|16226883|gb|AAL16289.1|AF428359_1 At1g29930/F1N18_23
           [Arabidopsis thaliana] gi|16376|emb|CAA27543.1|
           chlorophyll a/b binding protein (LHCP AB 140)
           [Arabidopsis thaliana] gi|15010744|gb|AAK74031.1|
           At1g29930/F1N18_23 [Arabidopsis thaliana]
           gi|15293003|gb|AAK93612.1| putative photosystem II type
           I chlorophyll a/b binding protein [Arabidopsis thaliana]
           gi|16648807|gb|AAL25594.1| At1g29930/F1N18_23
           [Arabidopsis thaliana] gi|20258873|gb|AAM14108.1|
           putative chlorophyll a/b-binding protein [Arabidopsis
           thaliana] gi|332193030|gb|AEE31151.1| chlorophyll a-b
           binding protein 1 [Arabidopsis thaliana]
          Length = 267

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 40/41 (97%), Positives = 40/41 (97%)
 Frame = -2

Query: 297 FGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVLGK 175
           FGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFV GK
Sbjct: 227 FGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267


>gb|AAL38341.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
           gi|21387019|gb|AAM47913.1| chlorophyll a/b-binding
           protein [Arabidopsis thaliana]
          Length = 267

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 40/41 (97%), Positives = 40/41 (97%)
 Frame = -2

Query: 297 FGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVLGK 175
           FGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFV GK
Sbjct: 227 FGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267