BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00032934
         (608 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCH50966.1| T4.5 [Malus x robusta]                                162   4e-38
emb|CAN78447.1| hypothetical protein VITISV_026810 [Vitis vinifera]   157   1e-36
gb|AAD21687.1| Strong similarity to gi|3600044 T12H20.12 proteas...   149   4e-34
emb|CAC37623.1| copia-like polyprotein [Arabidopsis thaliana]         147   1e-33
gb|AAC67200.1| putative retroelement pol polyprotein [Arabidopsi...   145   4e-33

>emb|CCH50966.1| T4.5 [Malus x robusta]
          Length = 1670

 Score =  162 bits (410), Expect = 4e-38
 Identities = 82/204 (40%), Positives = 116/204 (56%), Gaps = 2/204 (0%)
 Frame = +1

Query: 1    LIFTPNAFFVKDMASGRMLFQGQTKNGLYPXXXXXXXXXXXXX--PTALLSNKASSSIWH 174
            L F P  F+VKD+++G+MLFQG ++ GLYP               PTAL+  KA    WH
Sbjct: 674  LTFDPFGFYVKDLSTGKMLFQGPSEGGLYPFYWNASNGVSGIAISPTALMIAKADIHTWH 733

Query: 175  SRLGHPVTPIFHKLLQTRCIDVQSQSKTFSFCNDCVVGKITKLPFTSSVCESTTPLQLLH 354
             RLGHP     H ++    + V       S C  C +GK  +L F++  C S+ PLQLLH
Sbjct: 734  RRLGHPSGGTLHSVVHKNHLPVIGYVNNMSVCTACQLGKSYRLSFSTLPCTSSRPLQLLH 793

Query: 355  MDLWGPSPVISVSGNRFFATIVDDFSKCSWFFPLQSKSHFCSVFQSFKSFIENFLSYKIK 534
             D+WGPSP  S +G RF+  IVDDF+K SW +PL  KS   S  ++F   ++  L  +++
Sbjct: 794  TDVWGPSPTSSCTGYRFYLIIVDDFTKYSWLYPLHFKSDVFSTLKTFILKLQTLLDLQVQ 853

Query: 535  IVRSNNGGEFTSDKLETFLYMSGI 606
             +RS++GGEF +  L++F    GI
Sbjct: 854  SIRSDSGGEFLNKSLQSFFNEQGI 877


>emb|CAN78447.1| hypothetical protein VITISV_026810 [Vitis vinifera]
          Length = 1171

 Score =  157 bits (397), Expect = 1e-36
 Identities = 78/201 (38%), Positives = 114/201 (56%)
 Frame = +1

Query: 4    IFTPNAFFVKDMASGRMLFQGQTKNGLYPXXXXXXXXXXXXXPTALLSNKASSSIWHSRL 183
            I T N F VK+  +GR+L QG  +NGLYP              +  +  +A++  WHSRL
Sbjct: 405  ILTANGFVVKENLTGRILLQGVVENGLYPLAGCKTFHKSLTCLSTTIGVRANADTWHSRL 464

Query: 184  GHPVTPIFHKLLQTRCIDVQSQSKTFSFCNDCVVGKITKLPFTSSVCESTTPLQLLHMDL 363
            GHP + IF+ L  +  + V+  S    FC+ C +GK  +LPF  S  +S+ PL L+H D+
Sbjct: 465  GHPSSVIFNSLFHSNKLSVKGSSTKLEFCSACQLGKAKQLPFPESSRQSSVPLALIHSDV 524

Query: 364  WGPSPVISVSGNRFFATIVDDFSKCSWFFPLQSKSHFCSVFQSFKSFIENFLSYKIKIVR 543
            W  SPV S  G  ++   +DD+S+ SW +PL  KS   + F  FK+  E   S  IK ++
Sbjct: 525  W-VSPVQSTGGCSYYVLFIDDYSRYSWLYPLHRKSDVFATFVKFKTIAEKLFSTSIKQIQ 583

Query: 544  SNNGGEFTSDKLETFLYMSGI 606
            ++NGGEFTS++ + FL   GI
Sbjct: 584  TDNGGEFTSNQFKQFLTAQGI 604


>gb|AAD21687.1| Strong similarity to gi|3600044 T12H20.12 protease homolog from
           Arabidopsis thaliana BAC gb|AF080119 and is a member of
           the reverse transcriptase family PF|00078 [Arabidopsis
           thaliana]
          Length = 1415

 Score =  149 bits (376), Expect = 4e-34
 Identities = 80/203 (39%), Positives = 117/203 (57%), Gaps = 3/203 (1%)
 Frame = +1

Query: 7   FTPNAFFVKDMASGRMLFQGQTKNGLYPXXXXXXXXXXXXXPTALLSNK---ASSSIWHS 177
           F  N   + D+ + +++  G  +NGLY                AL SN+   A+  +WH 
Sbjct: 407 FDANKVCIIDLQTQKVVTTGPRRNGLYVLENQEF--------VALYSNRQCAATEEVWHH 458

Query: 178 RLGHPVTPIFHKLLQTRCIDVQSQSKTFSFCNDCVVGKITKLPFTSSVCESTTPLQLLHM 357
           RLGH  +     L  ++ I + ++S+T   C  C +GK ++LPF  S      PL  +H 
Sbjct: 459 RLGHANSKALQHLQNSKAIQI-NKSRTSPVCEPCQMGKSSRLPFLISDSRVLHPLDRIHC 517

Query: 358 DLWGPSPVISVSGNRFFATIVDDFSKCSWFFPLQSKSHFCSVFQSFKSFIENFLSYKIKI 537
           DLWGPSPV+S  G +++A  VDD+S+ SWF+PL +KS F SVF SF+  +EN L+ KIK+
Sbjct: 518 DLWGPSPVVSNQGLKYYAIFVDDYSRYSWFYPLHNKSEFLSVFISFQKLVENQLNTKIKV 577

Query: 538 VRSNNGGEFTSDKLETFLYMSGI 606
            +S+ GGEF S+KL+T L   GI
Sbjct: 578 FQSDGGGEFVSNKLKTHLSEHGI 600


>emb|CAC37623.1| copia-like polyprotein [Arabidopsis thaliana]
          Length = 1466

 Score =  147 bits (372), Expect = 1e-33
 Identities = 84/203 (41%), Positives = 116/203 (57%), Gaps = 3/203 (1%)
 Frame = +1

Query: 7   FTPNAFFVKDMASGRMLFQGQTKNGLYPXXXXXXXXXXXXXPTALLSNK---ASSSIWHS 177
           F  N   + D+ + +++ +G   NGLY                AL SN+   AS   WH 
Sbjct: 409 FDANKVCIIDLTTQKVVSKGPRNNGLYMLENSEF--------VALYSNRQCAASMETWHH 460

Query: 178 RLGHPVTPIFHKLLQTRCIDVQSQSKTFSFCNDCVVGKITKLPFTSSVCESTTPLQLLHM 357
           RLGH  + I  +LL  + I V ++S+T   C  C +GK T+L F SS   +  PL  +H 
Sbjct: 461 RLGHSNSKILQQLLTRKEIQV-NKSRTSPVCEPCQMGKSTRLQFFSSDFRALKPLDRVHC 519

Query: 358 DLWGPSPVISVSGNRFFATIVDDFSKCSWFFPLQSKSHFCSVFQSFKSFIENFLSYKIKI 537
           DLWGPSPV+S  G +++A  VDDFS+ SWFFPL+ KS F SVF +++  +EN L  KIK 
Sbjct: 520 DLWGPSPVVSNQGFKYYAVFVDDFSRFSWFFPLRMKSKFISVFIAYQKLVENQLGTKIKE 579

Query: 538 VRSNNGGEFTSDKLETFLYMSGI 606
            +S+ GGEFTS+KL+      GI
Sbjct: 580 FQSDGGGEFTSNKLKEHFREHGI 602


>gb|AAC67200.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1402

 Score =  145 bits (367), Expect = 4e-33
 Identities = 74/200 (37%), Positives = 109/200 (54%)
 Frame = +1

Query: 7   FTPNAFFVKDMASGRMLFQGQTKNGLYPXXXXXXXXXXXXXPTALLSNKASSSIWHSRLG 186
           F  +   + D A+ ++L  G T +GLY                +     AS  +WH RLG
Sbjct: 417 FDSDGVRINDKATKKLLIMGSTCDGLYCLKDDSQFKAFF----STRQQSASDEVWHRRLG 472

Query: 187 HPVTPIFHKLLQTRCIDVQSQSKTFSFCNDCVVGKITKLPFTSSVCESTTPLQLLHMDLW 366
           HP   +  +L++T  I +   SK  S C  C +GK T+LPF SS   S  PL+ +H DLW
Sbjct: 473 HPHPQVLQQLVKTNSISINKTSK--SLCEACQLGKSTRLPFVSSSFTSNRPLERVHCDLW 530

Query: 367 GPSPVISVSGNRFFATIVDDFSKCSWFFPLQSKSHFCSVFQSFKSFIENFLSYKIKIVRS 546
           GPSP+ SV G R++A  +D +S+ SW +PL+ KS F ++F +F   +EN L++KI + + 
Sbjct: 531 GPSPITSVQGFRYYAVFIDHYSRFSWIYPLKLKSDFYNIFVAFHKLVENQLNHKISVFQC 590

Query: 547 NNGGEFTSDKLETFLYMSGI 606
           + GGEF + K    L   GI
Sbjct: 591 DGGGEFVNHKFLQHLQNHGI 610