BLASTX nr result
ID: Coptis24_contig00032914
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00032914
(257 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002283354.1| PREDICTED: pentatricopeptide repeat-containi... 105 5e-21
emb|CAN70487.1| hypothetical protein VITISV_008663 [Vitis vinifera] 103 1e-20
ref|XP_002309680.1| predicted protein [Populus trichocarpa] gi|2... 100 2e-19
ref|XP_002461793.1| hypothetical protein SORBIDRAFT_02g008110 [S... 94 9e-18
ref|XP_002515415.1| pentatricopeptide repeat-containing protein,... 94 9e-18
>ref|XP_002283354.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 517
Score = 105 bits (261), Expect = 5e-21
Identities = 53/85 (62%), Positives = 61/85 (71%)
Frame = -3
Query: 255 YASAGQMDNAANLFSLMPSKDHISFNTMISGFANIGNVEAARQIFDQLTDGDVVSWNSMV 76
YAS GQMDNA LF MP KD SFN MISG+A IG AAR IFD++ D+VSWNSM+
Sbjct: 130 YASCGQMDNAMKLFDNMPLKDLASFNIMISGYAKIGKKAAARSIFDRIHAKDIVSWNSMI 189
Query: 75 LAYTKVGDMERACALFDQMPERNVV 1
LA T VGDM A LFD MP++NV+
Sbjct: 190 LACTNVGDMGNARNLFDVMPKKNVI 214
Score = 60.5 bits (145), Expect = 1e-07
Identities = 26/85 (30%), Positives = 54/85 (63%)
Frame = -3
Query: 255 YASAGQMDNAANLFSLMPSKDHISFNTMISGFANIGNVEAARQIFDQLTDGDVVSWNSMV 76
Y++ G +D+A +F M KD + +N+M++ +A+ G ++ A ++FD + D+ S+N M+
Sbjct: 99 YSAFGAIDHATKVFEEMGVKDVVVWNSMLAAYASCGQMDNAMKLFDNMPLKDLASFNIMI 158
Query: 75 LAYTKVGDMERACALFDQMPERNVV 1
Y K+G A ++FD++ +++V
Sbjct: 159 SGYAKIGKKAAARSIFDRIHAKDIV 183
>emb|CAN70487.1| hypothetical protein VITISV_008663 [Vitis vinifera]
Length = 1302
Score = 103 bits (257), Expect = 1e-20
Identities = 53/85 (62%), Positives = 60/85 (70%)
Frame = -3
Query: 255 YASAGQMDNAANLFSLMPSKDHISFNTMISGFANIGNVEAARQIFDQLTDGDVVSWNSMV 76
YAS GQMDNA LF MP KD SFN MISG+A IG AAR IFD++ D+VSWNSM+
Sbjct: 934 YASXGQMDNAMKLFDNMPLKDLASFNIMISGYAKIGRKAAARSIFDRIHAKDIVSWNSMI 993
Query: 75 LAYTKVGDMERACALFDQMPERNVV 1
LA T VGDM A LFD MP++N V
Sbjct: 994 LACTNVGDMGNARNLFDVMPKKNAV 1018
Score = 59.3 bits (142), Expect = 3e-07
Identities = 26/85 (30%), Positives = 53/85 (62%)
Frame = -3
Query: 255 YASAGQMDNAANLFSLMPSKDHISFNTMISGFANIGNVEAARQIFDQLTDGDVVSWNSMV 76
Y + G +D+A +F M KD + +N+M++ +A+ G ++ A ++FD + D+ S+N M+
Sbjct: 903 YXAFGAIDHATKVFEEMGVKDVVVWNSMLAAYASXGQMDNAMKLFDNMPLKDLASFNIMI 962
Query: 75 LAYTKVGDMERACALFDQMPERNVV 1
Y K+G A ++FD++ +++V
Sbjct: 963 SGYAKIGRKAAARSIFDRIHAKDIV 987
>ref|XP_002309680.1| predicted protein [Populus trichocarpa] gi|222855656|gb|EEE93203.1|
predicted protein [Populus trichocarpa]
Length = 500
Score = 99.8 bits (247), Expect = 2e-19
Identities = 46/85 (54%), Positives = 62/85 (72%)
Frame = -3
Query: 255 YASAGQMDNAANLFSLMPSKDHISFNTMISGFANIGNVEAARQIFDQLTDGDVVSWNSMV 76
YAS QMD+A +F+ MP KD SFN MISG+++IG +AR IFD + + D+VSWNSM+
Sbjct: 126 YASTDQMDDALKVFNSMPLKDLSSFNIMISGYSSIGKTLSARSIFDNMAEKDIVSWNSMI 185
Query: 75 LAYTKVGDMERACALFDQMPERNVV 1
AY + DMERAC LF +MP +N++
Sbjct: 186 SAYIQGEDMERACDLFREMPAKNII 210
>ref|XP_002461793.1| hypothetical protein SORBIDRAFT_02g008110 [Sorghum bicolor]
gi|241925170|gb|EER98314.1| hypothetical protein
SORBIDRAFT_02g008110 [Sorghum bicolor]
Length = 601
Score = 94.4 bits (233), Expect = 9e-18
Identities = 45/85 (52%), Positives = 61/85 (71%)
Frame = -3
Query: 255 YASAGQMDNAANLFSLMPSKDHISFNTMISGFANIGNVEAARQIFDQLTDGDVVSWNSMV 76
+ AG M +A +F MP +D IS+N MISG+A GNVE+AR +FD + DVVSW +MV
Sbjct: 222 FTRAGDMVSAHAVFDRMPIRDAISWNLMISGYAGSGNVESARTLFDLMDRKDVVSWTAMV 281
Query: 75 LAYTKVGDMERACALFDQMPERNVV 1
AY K+GD++ A LFDQMP++N+V
Sbjct: 282 SAYAKIGDLDSARVLFDQMPDKNLV 306
Score = 72.8 bits (177), Expect = 3e-11
Identities = 32/79 (40%), Positives = 51/79 (64%)
Frame = -3
Query: 255 YASAGQMDNAANLFSLMPSKDHISFNTMISGFANIGNVEAARQIFDQLTDGDVVSWNSMV 76
YA +G +++A LF LM KD +S+ M+S +A IG++++AR +FDQ+ D ++VSWN+M+
Sbjct: 253 YAGSGNVESARTLFDLMDRKDVVSWTAMVSAYAKIGDLDSARVLFDQMPDKNLVSWNAMI 312
Query: 75 LAYTKVGDMERACALFDQM 19
Y + A F QM
Sbjct: 313 TGYNHNSRYDEALRTFQQM 331
Score = 68.2 bits (165), Expect = 7e-10
Identities = 30/85 (35%), Positives = 51/85 (60%)
Frame = -3
Query: 255 YASAGQMDNAANLFSLMPSKDHISFNTMISGFANIGNVEAARQIFDQLTDGDVVSWNSMV 76
Y S+G A LF +P ++ +S+NT+++ F G++ +A +FD++ D +SWN M+
Sbjct: 191 YMSSGDTTGAMELFEAIPERNVVSWNTIVAAFTRAGDMVSAHAVFDRMPIRDAISWNLMI 250
Query: 75 LAYTKVGDMERACALFDQMPERNVV 1
Y G++E A LFD M ++VV
Sbjct: 251 SGYAGSGNVESARTLFDLMDRKDVV 275
Score = 64.7 bits (156), Expect = 8e-09
Identities = 28/81 (34%), Positives = 53/81 (65%)
Frame = -3
Query: 243 GQMDNAANLFSLMPSKDHISFNTMISGFANIGNVEAARQIFDQLTDGDVVSWNSMVLAYT 64
G + A +F M +D +S+N+++ + + G+ A ++F+ + + +VVSWN++V A+T
Sbjct: 164 GDVGVARKVFDGMADRDVVSWNSIVGVYMSSGDTTGAMELFEAIPERNVVSWNTIVAAFT 223
Query: 63 KVGDMERACALFDQMPERNVV 1
+ GDM A A+FD+MP R+ +
Sbjct: 224 RAGDMVSAHAVFDRMPIRDAI 244
>ref|XP_002515415.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223545359|gb|EEF46864.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 507
Score = 94.4 bits (233), Expect = 9e-18
Identities = 47/85 (55%), Positives = 57/85 (67%)
Frame = -3
Query: 255 YASAGQMDNAANLFSLMPSKDHISFNTMISGFANIGNVEAARQIFDQLTDGDVVSWNSMV 76
YAS QMD A+NLF+ MP KD SFN MISG++ G AR IFD + D VSWNSM+
Sbjct: 126 YASNAQMDYASNLFNSMPLKDISSFNIMISGYSTRGEAMLARSIFDSMEVRDFVSWNSMI 185
Query: 75 LAYTKVGDMERACALFDQMPERNVV 1
AY + GDME+ ALF +MP +N V
Sbjct: 186 SAYIRAGDMEKGLALFREMPVKNTV 210