BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00032888
         (247 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002889143.1| hypothetical protein ARALYDRAFT_476911 [Arab...    55   4e-06
ref|XP_004149801.1| PREDICTED: replication factor C subunit 5-li...    55   8e-06
ref|NP_177871.1| replication factor C subunit 3 [Arabidopsis tha...    54   1e-05
ref|XP_003526636.1| PREDICTED: replication factor C subunit 5-li...    54   1e-05
ref|XP_003523440.1| PREDICTED: replication factor C subunit 5-li...    54   1e-05

>ref|XP_002889143.1| hypothetical protein ARALYDRAFT_476911 [Arabidopsis lyrata subsp.
           lyrata] gi|297334984|gb|EFH65402.1| hypothetical protein
           ARALYDRAFT_476911 [Arabidopsis lyrata subsp. lyrata]
          Length = 369

 Score = 55.5 bits (132), Expect = 4e-06
 Identities = 25/39 (64%), Positives = 32/39 (82%)
 Frame = -1

Query: 139 LGDHVNKKIPSLQTRCTQHHFAPLDTTHVTERLKLVSEA 23
           +G+HVNK IP+LQ+RCT+  FAPLD  HV++RLK V EA
Sbjct: 174 IGNHVNKIIPALQSRCTRFRFAPLDPLHVSQRLKHVIEA 212


>ref|XP_004149801.1| PREDICTED: replication factor C subunit 5-like [Cucumis sativus]
           gi|449499057|ref|XP_004160708.1| PREDICTED: replication
           factor C subunit 5-like [Cucumis sativus]
          Length = 363

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 25/37 (67%), Positives = 30/37 (81%)
 Frame = -1

Query: 133 DHVNKKIPSLQTRCTQHHFAPLDTTHVTERLKLVSEA 23
           +HVNK IP+LQ+RCT+  FAPLD  HVTERL+ V EA
Sbjct: 178 NHVNKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEA 214


>ref|NP_177871.1| replication factor C subunit 3 [Arabidopsis thaliana]
           gi|12323400|gb|AAG51681.1|AC010704_25 putative
           replication factor C; 24844-22715 [Arabidopsis thaliana]
           gi|17529332|gb|AAL38893.1| putative replication factor C
           [Arabidopsis thaliana] gi|21436375|gb|AAM51357.1|
           putative replication factor C [Arabidopsis thaliana]
           gi|332197861|gb|AEE35982.1| replication factor C subunit
           3 [Arabidopsis thaliana]
          Length = 369

 Score = 54.3 bits (129), Expect = 1e-05
 Identities = 24/39 (61%), Positives = 32/39 (82%)
 Frame = -1

Query: 139 LGDHVNKKIPSLQTRCTQHHFAPLDTTHVTERLKLVSEA 23
           +G+HVNK IP+LQ+RCT+  FAPLD  H+++RLK V EA
Sbjct: 174 IGNHVNKIIPALQSRCTRFRFAPLDGVHMSQRLKHVIEA 212


>ref|XP_003526636.1| PREDICTED: replication factor C subunit 5-like [Glycine max]
          Length = 361

 Score = 54.3 bits (129), Expect = 1e-05
 Identities = 25/37 (67%), Positives = 30/37 (81%)
 Frame = -1

Query: 133 DHVNKKIPSLQTRCTQHHFAPLDTTHVTERLKLVSEA 23
           +HVNK IP+LQ+RCT+  FAPLD  HVTERLK V +A
Sbjct: 176 NHVNKIIPALQSRCTRFRFAPLDAVHVTERLKHVIKA 212


>ref|XP_003523440.1| PREDICTED: replication factor C subunit 5-like [Glycine max]
          Length = 363

 Score = 54.3 bits (129), Expect = 1e-05
 Identities = 25/37 (67%), Positives = 30/37 (81%)
 Frame = -1

Query: 133 DHVNKKIPSLQTRCTQHHFAPLDTTHVTERLKLVSEA 23
           +HVNK IP+LQ+RCT+  FAPLD  HVTERLK V +A
Sbjct: 178 NHVNKIIPALQSRCTRFRFAPLDAVHVTERLKHVIKA 214