BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00032847
         (237 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAA33866.1| ribulose 1,5-bisphosphate carboxylase small subun...    85   7e-15
sp|Q02980.1|RBS_MALSP RecName: Full=Ribulose bisphosphate carbox...    84   1e-14
sp|P24007.1|RBS_PYRPY RecName: Full=Ribulose bisphosphate carbox...    84   1e-14
gb|AFS41763.1| ribulose-1,5-bisphosphate carboxylase/oxygenase s...    84   2e-14
gb|AFS41753.1| ribulose-1,5-bisphosphate carboxylase/oxygenase s...    84   2e-14

>gb|AAA33866.1| ribulose 1,5-bisphosphate carboxylase small subunit [Malus x
           domestica x Pyrus communis]
          Length = 179

 Score = 84.7 bits (208), Expect = 7e-15
 Identities = 39/68 (57%), Positives = 51/68 (75%)
 Frame = -3

Query: 223 MILSRWG*CIPNQIRFLSFLHREVSRT*DTPRYYDGRYWTMWKLPMYGCTDSSQVLNEVE 44
           ++   W  C+  ++    F++RE +R+   P YYDGRYWTMWKLPM+GCTDSSQVL E+E
Sbjct: 89  LLRKNWVPCLEFELEH-GFVYRENNRS---PGYYDGRYWTMWKLPMFGCTDSSQVLKELE 144

Query: 43  EAKKAYPR 20
           EAKKAYP+
Sbjct: 145 EAKKAYPQ 152


>sp|Q02980.1|RBS_MALSP RecName: Full=Ribulose bisphosphate carboxylase small chain,
           chloroplastic; Short=RuBisCO small subunit; Flags:
           Precursor gi|19581|emb|CAA46475.1| ribulose bisphosphate
           carboxylase [Malus sp.]
          Length = 183

 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 39/68 (57%), Positives = 50/68 (73%)
 Frame = -3

Query: 223 MILSRWG*CIPNQIRFLSFLHREVSRT*DTPRYYDGRYWTMWKLPMYGCTDSSQVLNEVE 44
           ++   W  C+  ++    F++RE  R+   P YYDGRYWTMWKLPM+GCTDSSQVL E+E
Sbjct: 93  LLRKNWVPCLEFELEH-GFVYRENHRS---PGYYDGRYWTMWKLPMFGCTDSSQVLKELE 148

Query: 43  EAKKAYPR 20
           EAKKAYP+
Sbjct: 149 EAKKAYPQ 156


>sp|P24007.1|RBS_PYRPY RecName: Full=Ribulose bisphosphate carboxylase small chain,
           chloroplastic; Short=RuBisCO small subunit; Flags:
           Precursor gi|218021|dbj|BAA00450.1| RuBisCO small
           subunit [Pyrus pyrifolia var. culta]
          Length = 183

 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 39/68 (57%), Positives = 50/68 (73%)
 Frame = -3

Query: 223 MILSRWG*CIPNQIRFLSFLHREVSRT*DTPRYYDGRYWTMWKLPMYGCTDSSQVLNEVE 44
           ++   W  C+  ++    F++RE  R+   P YYDGRYWTMWKLPM+GCTDSSQVL E+E
Sbjct: 93  LLRKNWVPCLEFELE-TGFVYRENHRS---PGYYDGRYWTMWKLPMFGCTDSSQVLKELE 148

Query: 43  EAKKAYPR 20
           EAKKAYP+
Sbjct: 149 EAKKAYPQ 156


>gb|AFS41763.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit,
           partial (chloroplast) [Gossypium herbaceum]
           gi|406366534|gb|AFS41764.1| ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit, partial
           (chloroplast) [Gossypium herbaceum]
          Length = 165

 Score = 83.6 bits (205), Expect = 2e-14
 Identities = 38/67 (56%), Positives = 49/67 (73%)
 Frame = -3

Query: 223 MILSRWG*CIPNQIRFLSFLHREVSRT*DTPRYYDGRYWTMWKLPMYGCTDSSQVLNEVE 44
           ++ S+W  C+  ++    F+HR+ S     P YYDGRYWTMWKLPM+GCTDS+QVL E+E
Sbjct: 81  LLRSKWVPCLEFELEE-GFVHRKYS---SLPTYYDGRYWTMWKLPMFGCTDSAQVLEELE 136

Query: 43  EAKKAYP 23
           E KKAYP
Sbjct: 137 ECKKAYP 143


>gb|AFS41753.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
           (chloroplast) [Gossypium mustelinum]
          Length = 179

 Score = 83.6 bits (205), Expect = 2e-14
 Identities = 38/67 (56%), Positives = 49/67 (73%)
 Frame = -3

Query: 223 MILSRWG*CIPNQIRFLSFLHREVSRT*DTPRYYDGRYWTMWKLPMYGCTDSSQVLNEVE 44
           ++ S+W  C+  ++    F+HR+ S     P YYDGRYWTMWKLPM+GCTDS+QVL E+E
Sbjct: 89  LLRSKWVPCLEFELEE-GFVHRKYS---SLPTYYDGRYWTMWKLPMFGCTDSAQVLEELE 144

Query: 43  EAKKAYP 23
           E KKAYP
Sbjct: 145 ECKKAYP 151